Network for Analysing Longitudinal Population-based HIV/AIDS data on Africa (ALPHA Network) DDI.ALPHA.Network.Datasets

Sweetness H Dube

Africa Health Research Institute Nesstar Publisher Network for Analysing Longitudinal Population-based HIV/AIDS data on Africa (ALPHA Network) AHRI.ALPHA.Network.Datasets Kobus, Herbst Willem Hanekom Mark Siedner Guy Harling

Thobeka Mngomezulu

Phumzile Dlamini

Nomathamsanqa Majozi

Siyabonga Nxumalo

Sweetness Dube

Dickman Gareta

Eugene Ehlers

Theresa Smit

Gregory Ording-Jesperse

Africa Health Research Institute Nesstar Publisher Wellcome Trust SAPRIN 097410/Z/11/Z DST-SAMRC v7.0.0 ALPHA; ALPHA Network; HIV incidence; HIV mortality; ANDLA Network; residency Demography Epidemiology HIV Mortality Incidence South Africa South Africa Each observation describes an individual's period of residence in a household Household members of the Africa Health Research Institute Population Intervention Programme Study Area Surveillance Data Household demographic surveillance Herbst, K., Hanekom, W., Siedner, M., & Harling, G. (2021). Network for Analysing Longitudinal Population-based HIV/AIDS data on Africa (ALPHA Network) [Data set]. Africa Health Research Institute (AHRI). https://doi.org/10.23664/AHRI.ALPHA.NETWORK.DATASETS AN02-01 Dataset 6.1.NSDstat 526955 10 Nesstar 200801 AN02-01 Dataset 6.2a.NSDstat 71323 7 Nesstar 200801 AN02-02 Dataset 6.2b.NSDstat 224692 9 Nesstar 200801 AN03-01 Dataset 7.1.NSDstat 157815 4 Nesstar 200801 AN03-02 Dataset 7.2.NSDstat 72546 9 Nesstar 200801 AN04-02 Dataset 8.2.NSDstat 22841 14 Nesstar 200801 AN05-01 Dataset 9.2.NSDstat 897887 29 Nesstar 200801 AN06-01 Dataset 10.1.NSDstat 444064 80 Nesstar 200801 Person ID number 526955 0 11 256028 107940.706 68294.883 Male or female 526955 0 1 Male 246504 2 Female 280449 3 2 Date of birth- best estimate 526955 1890-01-01 2020-12-31 Type of area within DSS 526188 767 0 Urban 41505 1 Peri-Urban 153357 2 Rural 331326 Sysmiss 767 Whether resident or not 526955 0 0 Non-resident 190488 1 Resident 336467 Date of start of residence episode 526955 2000-01-01 2020-12-31 Type of entry 526955 0 1 baseline recruitment 135264 2 birth 40896 3 in-migration 186528 4 became eligible for study 16598 5 externally resident start 147669 Date of end of residence episode 526955 2000-01-01 2020-12-31 Type of exit 526955 0 1 present in study site 137949 2 death 23052 3 out-migration 208038 4 lost to follow-up 23515 5 became ineligible for study 15871 6 externally resident end 118529 9 1 Name of your study field site - ZA031 526955 0 Person ID number 71323 0 16 258195 94828.371 65230.328 Name of study field site 71323 0 Date of first negative HIV test 54847 2001-02-21 2022-04-19 Date of last negative HIV test 54847 2001-02-21 2022-04-20 Date of first positive HIV test 21268 2002-10-28 2022-04-19 Date of last positive HIV test 21141 2002-11-20 2022-04-20 Estimated sero-conversion date 0 Person ID number 224692 0 16 258195 81852.305 60715.191 Name of study field site 224692 0 date of HIV test 202186 2001-02-21 2022-04-20 HIV test result 224692 0 0 negative 148199 1 positive 76172 2 indeterminate 321 3 not reported 0 whether or not the participant was informed of test result 224692 0 0 no 201198 1 yes 23494 8 Don?t know/not asked 0 Where the test information comes from 224692 0 1 part of a population-based study 201198 2 part of a special research study 0 3 clinical record- HIV clinic 23494 4 self reported by respondent 0 5 report by proxy respondent at VA 0 6 clinical record- walk in VCT 0 7 clinical record- PMTCT/ANC 0 8 clinical record- other 0 Test assumption 224692 0 0 New test 224692 1 Test from previous study used 0 2 Previous positive HIV test used 0 3 self reported instead of testing (Kisumu) 0 Original hiv test result 224692 0 0 negative 148199 1 positive 76172 2 indeterminate 321 3 not reported 0 Round name 201198 23494 Person ID number 157815 0 14 256028 127592.565 75588.808 Name of study field site 157815 0 Unique ID number of mother 145363 12452 12 262771 95725.437 70662.628 Unique ID number of father 68869 88946 11 262789 83060.617 67805.333 Person ID number 72546 0 14 255956 114845.311 73534.766 Name of study field site 72546 0 Date of reported birth 72546 2000-01-01 2022-04-07 Whether date of birth was imputed 72546 0 0 no 72546 1 yes 0 Child’s unique ID if collect 67867 4679 592 262822 180067.607 52311.986 Place of delivery 39749 32797 0 Home 2358 1 Health Centre/Clinic 11332 2 Hospital 25954 3 Other 105 Sysmiss 32797 Parity of birth 72546 0 Multiple birth 72546 0 0 no 70919 1 yes 1627 Was it a still birth? 72546 0 0 no 72141 1 yes 405 Person ID number 22841 0 11 252755 70370.617 51435.763 Name of study field site 22841 0 selected malaria prevalence 21631 0 selected HIV prevalence 21631 0 most likely pregnancy status 21631 1210 0 not pregnant 0 1 pregnant 0 2 within 6w after pregnancy 0 3 indeterminate 0 9 not applicable 0 99 21631 Sysmiss 1210 likelihood of PREGSTAT 5333 17508 33 100 95.871 9.9 indeterminate outcome 21631 0 most likely cause 22841 0 likelihood of 1st cause 22841 0 40 100 90.599 14.84 second likely cause 1719 0 likelihood of 2nd cause 1719 21122 20 49 36.86 6.961 third likely cause 51 0 likelihood of 3rd cause 51 22790 no verbal autopsy done 22841 0 0 no 21631 1 yes 1210 Person ID number 897887 0 17 249203 115477.176 71446.803 Clinic patient number 897887 0 3 114387 21657.759 14797.081 Name of study field site 897887 0 Type of the clinic 897887 0 1 Clinic 888181 2 Hospital 9706 3 Not specified 0 4 Study Clinic 0 5 Community Health Centre 0 6 Mobile Clinic 0 Clinic code 897887 Type of information from clinic 897887 0 1 Visit by patient 897887 2 Referral form 0 3 Status update 0 Individual clinic current status 897887 0 1 Active 0 2 Dead 18878 3 Lost to follow-up 879009 4 Transfer out 0 Date of visit or encounter 897887 0 1320364800000 1900195200000 1728028512124.13 99128151441.442 Some people may make two visits in the same day 897887 0 1 216 38.985 31.026 whether patient referred from other facility and what type of referral 897887 0 0 not a referral, already a patient 887815 1 referred from HIV test centre 0 2 Study referra 0 3 ANC 0 4 TB clinic 0 5 referred from other ART clinic 10072 6 walk in 0 8 not recorded 0 whether patient received HIV test at this visit and result 0 897887 0 negative 0 1 positive 0 8 not tested 0 Sysmiss 897887 whether clinical staging performed and result 897887 0 was blood taken for CD4 count 897887 0 0 No 857932 1 Yes 39955 2 Unknown 0 What is the turnaround for results of CD4 count 0 897887 1 Same day 0 2 Not same day so next visit 0 Sysmiss 897887 whether CD4 count done and what result 39955 857932 6666 Not known 7777 Not disclosed 8888 Not done Whether viral load done on this visit 897887 0 0 No 854475 1 Yes 43412 2 Unknown 0 Results of the viral load 43412 854475 6666 Not known 7777 Not disclosed 8888 Not done Whether patient was eligible for ART at this visit 897887 0 0 Not eligible 0 1 Eligible 897887 3 Don't know,not recorded 0 Did the patient get ART this visit 897887 0 0 No 0 1 Yes inititaed this visit 0 2 Yes continuation 0 3 Restart, same regimen 0 4 Regimen change 0 8 Unknown 897887 reason for ART initiation 897887 0 0 CD4 & stage combination 0 1 Clinical staging 0 2 D4 count 0 3 Pregnancy/breastfeeding 0 4 Research requirement 0 5 Other 897887 Year of starting ART drugs 897887 0 1994 2020 2010.443 3.049 Month of starting ART drugs 897887 0 whether ART drugs administered and what type of regimen 889429 8458 0 no ART drug given 0 1 first line treatment 742445 2 second line treatment 142553 3 Non standard mix 4431 Sysmiss 8458 how many days’ drug supply patient receiv 889429 8458 0 366 37.911 28.518 whether patient referred to other facilty and what type of referral 897887 0 0 not referred 890064 1 referred to other ART clinic 7823 2 referred to other health facility (e.g. TB clinic) 0 3 referred to social service 0 8 not recorded 0 whether patient received more counselling during this visit 897887 0 0 no more counselling 0 1 partner counselling 0 2 adherence training 0 3 other 897887 8 no other advisory services 0 whether patient received other treatment during this visit 897887 0 0 no other treatment 0 1 treated other STI 0 2 treated opportunistic infections 0 3 TB treatment 0 4 other treatment 0 8 not recorded 897887 Whether patient was given cotrimoxazole this visit 897887 0 0 No 806724 1 Yes 65311 8 Don't know 25852 Whether patient was given isoniazid this visit 897887 0 0 No 603835 1 Yes 72183 8 Don't know 221869 Unique ID for each person 444064 0 14 258195 76833.582 56284.141 The name used locally for this survey round 444064 0 Date of interview in Stata date format 444064 2005-01-05 2022-04-20 Date of birth reported in survey in Stata date format 444064 1798-01-01 2007-03-27 Month of birth as reported in survey. 444064 0 Year of birth as reported in survey. 444064 0 1798 2007 1976.608 17.543 Age reported in the survey 444064 0 7 999 36.115 18.314 Sex reported in the survey 444064 0 1 Male 173134 2 Female 270930 Ever been married 444064 0 0 No 178684 1 Yes 48854 3 Don't know 0 8 Not asked 0 9 Missing 216526 number of spouses they have ever had, including current spouses 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 number of spouses they have now 444064 0 1 9 2 266 3 37 4 10 5 2 6 4 8 Not asked 1 9 Missing 0 88 Not asked 0 99 Missing 443735 888888 Not asked 0 999999 Missing 0 Ever had sex 444064 0 0 No 47230 1 Yes 117664 3 Don't know 0 8 Not asked 0 9 Missing 279170 Is he circumcised 444064 0 0 No 43592 1 Yes 13935 3 Don't know 0 8 Not asked 0 9 Missing 386537 Age when circumcised 444064 0 88 Not asked 0 99 Missing 444064 When were he circumcised 444064 0 1 As a child or teenager 8424 2 As an adult 4483 3 As an infant 442 4 Deprecated (i.e. pre-2009) 40177 93 Refused 0 97 Not applicable 0 98 Dont know 0 99 Missing 390538 first sex with who 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 444064 888888 Not asked 0 999999 Missing 0 Age at first sex (At first marriage should be given as the age at first marriage 444064 0 88 Not asked 99 Missing Whether or not respondent married their first sexual partner 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Whether or not respondent used a condom at first sex 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Whether or not respondent used contraception at first sex 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Method of contraception at first sex 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 444064 888888 Not asked 0 999999 Missing 0 Approximate age of first sexual partner 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Exact age of first sexual partner 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 444064 888888 Not asked 0 999999 Missing 0 Age at second sexual partner 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 444064 888888 Not asked 0 999999 Missing 0 time between first and second sexual partner 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Sex last month 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Number of sexual partners in the last month 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 444064 Had sex with anyone within the 12 months before the survey 444064 0 0 No 3 1 Yes 63098 3 Don't know 0 8 Not asked 0 9 Missing 380963 Number of sexual partners in the last 12 months 444064 0 888888 Not asked 999999 Missing Total number of sexual partners in whole life 444064 0 888888 Not asked 999999 Missing Number of partners since the last survey 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 444064 Number of new sexual partners in the last 12 months 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 444064 Number of days elapsed since first sex with partner 1 444064 0 999999 Missing Month in which first had sex with partner 1 444064 0 999999 Missing 444064 Year in which first had sex with partner 1 444064 0 999999 Missing 444064 Number of days elapsed since first sex with partner 2 444064 0 999999 Missing Month in which first had sex with partner 2 444064 0 999999 Missing 444064 Year in which first had sex with partner 2 444064 0 999999 Missing 444064 Number of days elapsed since first sex with partner 3 444064 0 999999 Missing Month in which first had sex with partner 3 444064 0 999999 Missing 444064 Year in which first had sex with partner 3 444064 0 999999 Missing 444064 Number of days elapsed since last sex with partner 1 444064 0 999999 Missing Month in which last had sex with partner 1 444064 0 99 Missing 444064 Year in which last had sex with partner 1 444064 0 99 Missing 444064 Number of days elapsed since last sex with partner 2 444064 0 999999 Missing Month in which last had sex with partner 2 444064 0 99 Missing 444064 Year in which last had sex with partner 2 444064 0 99 Missing 444064 Number of days elapsed since last sex with partner with partner 3 444064 0 999999 Missing Month in which last had sex with partner 3 444064 0 99 Missing 444064 Year in which last had sex with partner 3 444064 0 99 Missing 444064 Relationship to sexual partner 1 444064 0 10 Spouse or cohabiting 0 11 Spouse 12296 12 Cohabiting 0 21 Regular 66172 22 Girlfriend/boyfriend 5 31 Friend 2299 32 Casual 3400 33 Consensual partner 0 34 Workmate 0 35 Boss/work supervisor 0 36 Employee 0 37 Fellow student 0 41 Stranger 0 42 Sugar daddy 0 43 Rapist 0 50 Commercial 0 51 Bar girl 0 60 Ex-spouse 0 61 Former wife or regular partner 11220 70 Other 158 71 Other friend or visitor 65 72 Relative 0 73 In-law 0 88 Not asked 139173 99 Missing 209276 Relationship to sexual partner 2 444064 0 10 Spouse or cohabiting 0 11 Spouse 140 12 Cohabiting 0 21 Regular 1647 22 Girlfriend/boyfriend 6 31 Friend 1030 32 Casual 697 33 Consensual partner 0 34 Workmate 0 35 Boss/work supervisor 0 36 Employee 0 37 Fellow student 0 41 Stranger 0 42 Sugar daddy 0 43 Rapist 0 50 Commercial 0 51 Bar girl 0 60 Ex-spouse 0 61 Former wife or regular partner 1097 70 Other 55 71 Other friend or visitor 27 72 Relative 0 73 In-law 0 88 Not asked 188938 99 Missing 250427 Relationship to sexual partner 3 444064 0 10 Spouse or cohabiting 0 11 Spouse 16 12 Cohabiting 0 21 Regular 262 22 Girlfriend/boyfriend 1 31 Friend 236 32 Casual 172 33 Consensual partner 0 34 Workmate 0 35 Boss/work supervisor 0 36 Employee 0 37 Fellow student 0 41 Stranger 0 42 Sugar daddy 0 43 Rapist 0 50 Commercial 0 51 Bar girl 0 60 Ex-spouse 0 61 Former wife or regular partner 179 70 Other 4 71 Other friend or visitor 8 72 Relative 0 73 In-law 0 88 Not asked 192362 99 Missing 250824 Approximate age of sexual partner 1 444064 0 1 10 or more years older 6452 2 5-9 years older 13577 3 Within 5 years of your age 42619 4 5-9 years younger 5086 5 10 or more years younger 1982 9 Don't know/missing 374348 Approximate age of sexual partner 2 444064 0 1 10 or more years older 68 2 5-9 years older 218 3 Within 5 years of your age 2292 4 5-9 years younger 520 5 10 or more years younger 178 9 Don't know/missing 440788 Approximate age of sexual partner 3 444064 0 1 10 or more years older 12 2 5-9 years older 24 3 Within 5 years of your age 440 4 5-9 years younger 86 5 10 or more years younger 29 9 Don't know/missing 443473 Age of sexual partner 1 444064 0 999999 Missing Age of sexual partner 2 444064 0 999999 Missing Age of sexual partner 3 444064 0 999999 Missing Marital status of partner # at last sex 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 whether the respondent disclosed their HIV status to partner 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 whether partner # disclosed their HIV status to the respondent 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Used a condom at last sex with partner 1 444064 0 0 No 12793 1 Yes 29602 3 Don't know 647 8 Not asked 0 9 Missing 401022 Used a condom at last sex with partner 2 444064 0 0 No 513 1 Yes 2195 3 Don't know 79 8 Not asked 0 9 Missing 441277 Used a condom at last sex with partner 3 444064 0 0 No 93 1 Yes 451 3 Don't know 16 8 Not asked 0 9 Missing 443504 How often used a condom with partner 1 444064 0 0 Never 35556 1 Sometimes 23106 2 Every time 17717 99 Missing 367685 How often used a condom with partner 2 444064 0 0 Never 1815 1 Sometimes 1036 2 Every time 1720 99 Missing 439493 How often used a condom with partner 3 444064 0 0 Never 320 1 Sometimes 180 2 Every time 361 99 Missing 443203 Whether used a method of contraception at last sex with partner # 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Method of contraception used at last sex with partner # 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 444064 888888 Not asked 0 999999 Missing 0 Whether used a method of contraception at first sex with partner # 444064 0 8 Not asked 0 9 Missing 444064 88 Not asked 0 99 Missing 0 888888 Not asked 0 999999 Missing 0 Method of contraception used at first sex with partner # 444064 0 8 Not asked 0 9 Missing 0 88 Not asked 0 99 Missing 444064 888888 Not asked 0 999999 Missing 0 Whether the relationship with partner 1 is ongoing, i.e. respondent expects to h 444064 0 0 No 13172 1 Yes 76202 3 Don't know 254 8 Not asked 0 9 Missing 354436 Whether the relationship with partner 2 is ongoing, i.e. respondent expects to h 444064 0 0 No 1824 1 Yes 2695 3 Don't know 52 8 Not asked 0 9 Missing 439493 Whether the relationship with partner 3 is ongoing, i.e. respondent expects to h 444064 0 0 No 325 1 Yes 527 3 Don't know 18 8 Not asked 0 9 Missing 443194 Residence of partner 1 at last sex 444064 0 1 Not with member 4306 2 Resides in isigodi 24528 3 Resides Outside isigodi 39111 4 Resides with Member 21193 9 182640 93 Refused 0 97 Not applicable 0 98 Dont know 0 99 Missing 172286 Residence of partner 2 at last sex 444064 0 1 Not with member 244 2 Resides in isigodi 1348 3 Resides Outside isigodi 2699 4 Resides with Member 236 9 245168 93 Refused 0 97 Not applicable 0 98 Dont know 0 99 Missing 194369 Residence of partner 3 at last sex 444064 0 1 Not with member 44 2 Resides in isigodi 250 3 Resides Outside isigodi 534 4 Resides with Member 34 9 248445 93 Refused 0 97 Not applicable 0 98 Dont know 0 99 Missing 194757