Verbal Autopsy:Reimagining data and automated cause assignment (using ALPHA network data) NIH.Verbal.Autopsy.Dataset.v1 Milly Marston Africa Health Research Institute 2022-03-21 Nesstar Publisher v01 Verbal Autopsy:Reimagining data and automated cause assignment (using ALPHA network data) ALPHA HIM - U 2000-2017 AHRI.NIH.Verbal.Autopsy.Dataset.v1 Sam Clark Clara Calvert Milly Marston Yue Chu Africa Health Research Institute Nesstar Publisher National Institutes of Health 1R01HD086227-00 DataFirst helpdesk Health and Demographic Surveillance System (HDSS) Version 1.0.0 Mortality; Verbal Autopsy; InSilicoVA; cause of death; ALPHA; ALPHA network Demography; Epidemiology; HIV; Mortality; Verbal Autopsy South Africa South Africa Village Each observation describes either an individual or an individual's period of residence in a household. Household members of the Africa Health Research Institute Population Intervention Programme Study Area Surveillance Data Africa Health Research Institute Household demographic Surveillance Face-to-face [f2f] The original unharmonised data was collected by the Africa Health Research Institute Karonga (MW011) DataFirst Licensed access data, available under conditions AN02-02 Dataset 6.2b.NSDstat 224692 9 Nesstar 200801 HIS01-01 HospitalDeaths.NSDstat 5753 51 Nesstar 200801 VA01-01 PhyscianCoding Cause of Death.NSDstat 40442 28 Nesstar 200801 Person ID number 224692 0 16 258195 81852.305 60715.191 Name of study field site 224692 0 date of HIV test 202186 2001-02-21 2022-04-20 HIV test result 224692 0 0 negative 148199 1 positive 76172 2 indeterminate 321 3 not reported 0 whether or not the participant was informed of test result 224692 0 0 no 201198 1 yes 23494 8 Don?t know/not asked 0 Where the test information comes from 224692 0 1 part of a population-based study 201198 2 part of a special research study 0 3 clinical record- HIV clinic 23494 4 self reported by respondent 0 5 report by proxy respondent at VA 0 6 clinical record- walk in VCT 0 7 clinical record- PMTCT/ANC 0 8 clinical record- other 0 Test assumption 224692 0 0 New test 224692 1 Test from previous study used 0 2 Previous positive HIV test used 0 3 self reported instead of testing (Kisumu) 0 Original hiv test result 224692 0 0 negative 148199 1 positive 76172 2 indeterminate 321 3 not reported 0 Round name 201198 23494 Unique patient identifier 5753 0 35 108138 36252.952 32122.654 Patient gender 5753 0 0 Male 2775 1 Female 2978 9 Unknown 0 Date of birth 5753 0 -1805069420000 1951344000000 316491009382.931 733586226916.454 Local area of residence 5753 0 Isigodi of residence 5751 0 Nearest to place of residence 5753 0 1 Kwamsane 533 2 Somkhele 390 3 Mtuba 917 4 Sipho Zungu 282 5 Zwenelisha 84 6 Mpukunyoni 268 7 Nkundusi 388 8 Madwaleni 196 9 Ntondweni 43 10 Gunjaneni 117 11 Macabuzela 191 12 Makhowe 173 13 Inhlwathi 153 14 Mpembeni 204 15 Philanjalo 0 16 Gateway 1180 17 Esiyembeni 25 18 Machibini 136 19 Unknown 207 20 Cingci 18 21 Baksdina 164 22 84 Unique admission identifier 5753 0 36 123033 44717.25 37841.626 Date of admission 5753 0 1600010100000 1953082229000 1755257318324.56 99876334388.546 Age in completed yrs on admission 0 5753 Age in days, if age=0 0 5753 Admission ward 5753 0 1 C Female Medical 2118 2 H Male Surgical 239 3 High Care Unit 198 4 Maternity / ANC 2 7 Post-natal C/S 0 8 Post-NVD 3 9 TB male 110 10 B Paediatric Medical 368 11 S Female Surgical 326 12 TB Female 90 13 H Male Medical 2026 14 B Paediatric Surgical 7 15 Labour Ward 0 17 Nursery Ward 186 18 9 19 19 3019 14 3020 37 7020 1 Admitting doctor code 5752 1 1 14123 842.866 2346.586 Date of discharge 5753 0 1602684231000 1953108000000 1755986204242.94 99849653317.318 Status on discharge 5753 0 0 Current Inpatient 0 1 Discharged 0 2 Transferred 0 3 Died 5753 4 Absconded 0 9 Unknown 0 Discharge doctor code 5743 10 1 14123 543.729 1494.859 Length of Stay (days) 5753 0 0 367 7.948 12.246 Length of Stay (hours), if LOS=0 703 5050 0 23 12.307 7.106 HIV Status on admission 5753 0 0 Undefined 11 1 Positive 2628 2 Negative 323 3 Not recorded 2128 4 Child unexposed 113 5 Awaiting PCR result 39 9 Unknown 511 On ART prior to admission 5753 0 0 Undefined 69 1 Yes 1881 2 No 2297 9 Unknown 1506 Date on which ART was started 1893 3860 -5396112000000 1938124800000 -1642040808874.8 1429772861453.64 10000000000001 .. Latest HIV test in hospital result 5753 0 0 Not done 5480 1 Positive 187 2 Negative 81 3 PCR Taken 5 Latest in hospital CD4 count 170 5583 3 1178 156.782 188.194 Date on which CD4 was done 170 5583 -2556057600000 2029536000000 -3741628235.294 2065226536692.56 10000000000001 .. Admission diagnosis 1 type 5751 2 1 Immediate Cause 5613 2 Underlying Cause 26 3 Associated Cause 9 9 Symptom/Sign 103 Sysmiss 2 Admission diagnosis 1 ICD10 code 5751 0 Admission diagnosis 2 type 4490 1263 1 Immediate Cause 67 2 Underlying Cause 1992 3 Associated Cause 2379 9 Symptom/Sign 52 Sysmiss 1263 Admission diagnosis 2 ICD10 code 4490 0 Admission diagnosis 3 type 2068 3685 1 Immediate Cause 6 2 Underlying Cause 30 3 Associated Cause 1984 9 Symptom/Sign 48 Sysmiss 3685 Admission diagnosis 3 ICD10 code 2068 0 Admission diagnosis 4 type 507 5246 1 Immediate Cause 1 2 Underlying Cause 1 3 Associated Cause 495 9 Symptom/Sign 10 Sysmiss 5246 Admission diagnosis 4 ICD10 code 507 0 Admission diagnosis 5 type 102 5651 1 Immediate Cause 0 2 Underlying Cause 0 3 Associated Cause 98 9 Symptom/Sign 4 Sysmiss 5651 Admission diagnosis 5 ICD10 code 102 0 Admission diagnosis 6 type 11 5742 1 Immediate Cause 0 2 Underlying Cause 0 3 Associated Cause 10 9 Symptom/Sign 1 Sysmiss 5742 Admission diagnosis 6 ICD10 code 11 0 Discharge diagnosis 1 type 5748 5 1 Immediate Cause 5626 2 Underlying Cause 29 3 Associated Cause 9 9 Symptom/Sign 84 Sysmiss 5 Discharge diagnosis 1 ICD10 code 5748 0 Discharge diagnosis 2 type 4870 883 1 Immediate Cause 104 2 Underlying Cause 2647 3 Associated Cause 2093 9 Symptom/Sign 26 Sysmiss 883 Discharge diagnosis 2 ICD10 code 4870 0 Discharge diagnosis 3 type 2527 3226 1 Immediate Cause 7 2 Underlying Cause 49 3 Associated Cause 2446 9 Symptom/Sign 25 Sysmiss 3226 Discharge diagnosis 3 ICD10 code 2527 0 Discharge diagnosis 4 type 762 4991 1 Immediate Cause 1 2 Underlying Cause 3 3 Associated Cause 747 9 Symptom/Sign 11 Sysmiss 4991 Discharge diagnosis 4 ICD10 code 762 0 Discharge diagnosis 5 type 160 5593 1 Immediate Cause 0 2 Underlying Cause 0 3 Associated Cause 154 9 Symptom/Sign 6 Sysmiss 5593 Discharge diagnosis 5 ICD10 code 160 0 Discharge diagnosis 6 type 15 5738 1 Immediate Cause 0 2 Underlying Cause 0 3 Associated Cause 14 9 Symptom/Sign 1 Sysmiss 5738 Discharge diagnosis 6 ICD10 code 15 0 Surveillance individual identifier 446 5307 149 172512 70121.504 46772.652 ARTemis individual identifier 1144 4609 154 211127 97125.941 63174.562 Theatre Procedure Code 4 0 Anaesthetic Code 4 5749 0 Undefined 1 1 General 1 2 Spinal block 0 3 Nerve block 0 4 Local 1 9 Unknown 1 Sysmiss 5749 VA Unique Internal Id 40442 0 20854 155668 60450.121 29969.001 Unique Internal Id of Individual 40442 0 11 176326 58908.789 37154.011 Individual's Date of Death 40442 2000-01-01 2016-12-19 Individual's Date of Birth 40442 1897-08-07 2015-08-13 Sex 40442 0 1 Male 20362 2 Female 20077 9 Unknown 3 Underlying cause of death 39825 0 Immediate cause of death 14383 0 Contributory cause of death 1 6606 0 Contributory cause of death 2 1614 0 Doctor 40295 0 Date of diagnosis 40442 1795-01-01 2206-03-06 Immediate cause of death 12926 0 Immediate Cause Descriptin 12926 Immediate Cause GBD code 12926 0 Immediate Cause GBD Descriptin 12926 0 Underlying cause of death 40278 0 Underlying Cause Descriptin 40278 Underlying Cause GBD code 40278 0 Underlying Cause GBD Desc 40278 0 Associated cause of death 1 5542 0 Associated Cause 1 Descriptin 5542 Associated Cause 1 Cause GBD code 5542 0 Associated Cause 1 GBD Descriptin 5542 0 Associated cause of death 2 1284 0 Descriptive label for code above 1284 0 Associated Cause 2 Cause GBD code 1284 0 Associated Cause 2 GBD Descriptin 1284 0 Summary GBD Cause 40442 0