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<docDscr>
  <citation>
    <titlStmt>
      <IDNo>DDI.MORNACH.Primary.Endpoint.BasicAnalytical.Dataset</IDNo>
    </titlStmt>
    <prodStmt>
      <producer abbr="AHRI" affiliation="" role="">Africa Health Research Institute</producer>
      <prodDate date="">
        <_value></_value>
      </prodDate>
      <software version="v5">NADA</software>
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<stdyDscr>
  <citation>
    <titlStmt>
      <titl>AHRI.MONARCH (Management and Optimisation of Nutrition, Antenatal, Reproductive, Child health &amp; HIV care)</titl>
      <subTitl/>
      <altTitl/>
      <parTitl/>
      <IDNo>AHRI.MORNACH.Primary.Endpoint.BasicAnalytical.Dataset</IDNo>
    </titlStmt>
    <rspStmt>
      <othId role="" affiliation="" email="">
        <p>Mpukunyoni community for their participation in the Population Intervention Programme</p>
      </othId>
    </rspStmt>
    <prodStmt>
      <producer abbr="" affiliation="" role="">Africa Health Research Institute</producer>
      <copyright/>
      <software version="5.0" date="2024-03-12">NADA</software>
      <grantNo/>
    </prodStmt>
    <distStmt>
      <depDate date=""/>
      <distDate date=""/>
    </distStmt>
    <serStmt>
      <serName/>
      <serInfo><![CDATA[]]></serInfo>
    </serStmt>
    <verStmt>
      <version date="">v1.0.0</version>
      <verResp/>
      <notes><![CDATA[]]></notes>
    </verStmt>
    <biblCit format=""><![CDATA[]]></biblCit>
    <notes><![CDATA[]]></notes>
  </citation>
  <stdyInfo>
    <studyBudget><![CDATA[]]></studyBudget>
    <subject>
                  
                  
    </subject>
    <abstract><![CDATA[MONARCH was a stepped-wedge trial of continuous quality improvement (CQI) conducted at the 7 clinics part of the AHRI original demographic surveillance area: Mtubatuba, KwaMsane, Somkhele, Gunjaneni, Machibini, Esiyembeni and Mpukunyoni clinics. Primary endpoint data were collected from the 7 participating clinics + the local district hospital as most deliveries occurred at the hospital, although no CQI activities occurred at the hospital.
Detailed methods are provided in the published protocol paper (Chetty, Yapa et al. BMC Health Serv Res 2018;18:625. doi: 10.1186/s12913-018-3404-3 &lt;https://doi.org/10.1186%2Fs12913-018-3404-3&gt; ) and the primary endpoint manuscript (Yapa et al. PLoS Med 2020; 17:e1003150. doi: 10.1371/journal.pmed.1003150 &lt;https://doi.org/10.1371/journal.pmed.1003150&gt; ).
Variables included in this (long/ panel) dataset (per request):
(1) Primary outcomes: HIV VL variable outvltv; repeat HIV screening variable: outscrtv
(2)  Period indicator: stepv
(3)  Treatment indicator: qib
(4) Cluster indicator variables: clinic1, clust1
(5) Randomised by clinic size: clinsize
(6) Individual subject identifier: studyid, idno


**primary model without random clinic-time interaction (basic H&amp;H)
meglm outvltv qib i.stepv if visitno!=11 &amp; seroconv!=1 ||clinic1:, family(poisson) vce(cluster clinic1) eform
meglm outscrtv qib i.stepv if visitno!=11||clinic1:, family(poisson) vce(cluster clinic1) eform]]></abstract>
    <sumDscr>
      <collDate date="2014-09-10" event="start" cycle=""/>
      <collDate date="2017-01-23" event="end" cycle=""/>
      <nation abbr="ZA">South Africa</nation>
      <geogCover/>
      <geogUnit/>
      <anlyUnit><![CDATA[Antenatal visit. Defined by date.
NB: visit 11 is the delivery date. Up to 10 ANC visits were included in the analysis. If confv is missing or 0 that means the participant did not attend an ANC visit at that time (therefore, date  and other information for that visit should be missing). 
All ANC visit dates were entered sequentially based on actual attendance, regardless of time elapsed since last visit or when it was scheduled. E.g., if confv for visit 4 was missing, there should not be any data for visit 5 or beyond. There will be a date for visit 11 as that variable was created based on the delivery date.]]></anlyUnit>
      <universe><![CDATA[]]></universe>
      <dataKind>Routine clinical data extracted from paper medical records</dataKind>
    </sumDscr>
    <qualityStatement>
      <standardsCompliance>
        <standard>
          <standardName/>
          <producer/>
        </standard>
        <complianceDescription/>
      </standardsCompliance>
      <otherQualityStatement/>
    </qualityStatement>
    <notes><![CDATA[]]></notes>
    <exPostEvaluation completionDate="" type="">
      <evaluationProcess/>
      <outcomes/>
    </exPostEvaluation>
  </stdyInfo>
  <method>
    <dataColl>
      <timeMeth/>
      <frequenc/>
      <sampProc><![CDATA[]]></sampProc>
      <sampleFrame>
        <sampleFrameName/>
        <custodian/>
        <universe/>
        <frameUnit isPrimary="">
          <unitType numberOfUnits=""/>
        </frameUnit>
        <updateProcedure/>
      </sampleFrame>
      <deviat/>
      <resInstru><![CDATA[]]></resInstru>
      <instrumentDevelopment type=""/>
      <collSitu><![CDATA[]]></collSitu>
      <actMin><![CDATA[]]></actMin>
      <ConOps><![CDATA[]]></ConOps>
      <weight><![CDATA[]]></weight>
      <cleanOps><![CDATA[]]></cleanOps>
    </dataColl>
    <notes><![CDATA[]]></notes>
    <anlyInfo>
      <respRate><![CDATA[]]></respRate>
      <EstSmpErr><![CDATA[]]></EstSmpErr>
      <dataAppr><![CDATA[]]></dataAppr>
    </anlyInfo>
    <stdyClas><![CDATA[]]></stdyClas>
    <dataProcessing type=""/>
    <codingInstructions relatedProcesses="" type="">
      <txt/>
      <command formalLanguage=""/>
    </codingInstructions>
  </method>
  <dataAccs>
    <setAvail>
      <accsPlac URI=""/>
      <origArch/>
      <avlStatus/>
      <collSize/>
      <complete/>
      <fileQnty/>
      <notes><![CDATA[]]></notes>
    </setAvail>
    <useStmt>
      <restrctn/>
      <citReq><![CDATA[Yapa, M. (2024). AHRI.MONARCH (Management and Optimisation of Nutrition, Antenatal, Reproductive, Child health &amp; HIV care) [Data set]. Africa Health Research Institute. DOI:https://doi.org/10.23664/AHRI.MORNACH.PRIMARY.ENDPOINT.BASICANALYTICAL.DATASET]]></citReq>
      <deposReq><![CDATA[]]></deposReq>
      <conditions><![CDATA[Access to the data requires accurate completion of the online data access application form accessible on the AHRI Data repository(&lt;https://data.ahri.org/&gt;). Data users are required to abide by the data use conditions stipulated on the application for access to the data. Failure to do so may result in their data access privileges being revoked by the Data Custodian. In order to recognise the effort and intellectual contributions of AHRI investigators in producing and curating the data, users of AHRI data must acknowledge the source of the data and abide by the terms and conditions under which the data is accessed and must cite the dataset in publication using the citation provided as part of this documentation. All analytical datasets published on the AHRI Data Repository are assigned digital object identifier (DOIs) and the DOIs can be found on the Data Repository under Study Description tab - Access policy. AHRI data users are required to always cite the dataset using the relevant DOI.]]></conditions>
      <disclaimer><![CDATA[]]></disclaimer>
    </useStmt>
    <notes><![CDATA[]]></notes>
  </dataAccs>
  <notes><![CDATA[]]></notes>
</stdyDscr>
<fileDscr ID="F6">
  <fileTxt>
    <fileName>primep_taljaard_monarch_long</fileName>
    <fileCont></fileCont>
    <dimensns>
      <caseQnty>15372</caseQnty>
      <varQnty>13</varQnty>
    </dimensns>
    <dataChck></dataChck>
    <dataMsng></dataMsng>
    <verStmt>
      <version></version>
    </verStmt>
  </fileTxt>
  <notes></notes>
</fileDscr>
<dataDscr>
<var ID="V159" name="idno" files="F6" intrvl="contin">
  <varFormat type="numeric"/>
  <location width="9"/>
  <labl>ID Number</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="invd"/>
  <sumStat type="min">1</sumStat>
  <sumStat type="max">2502</sumStat>
  <sumStat type="mean">1257.416</sumStat>
  <sumStat type="stdev">725.771</sumStat>
</var>
<var ID="V160" name="studyid" files="F6" intrvl="discrete">
  <varFormat type="character"/>
  <location width="8"/>
  <labl>Study ID</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="invd"/>
</var>
<var ID="V161" name="clinic1" files="F6" intrvl="discrete">
  <varFormat type="numeric"/>
  <location width="14"/>
  <labl>First attended ANC clinic cleaned</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="invd"/>
  <catgry>
    <catValu>1</catValu>
    <labl>Gunjaneni</labl>
    <catStat type="vald"/>
  </catgry>
  <catgry>
    <catValu>2</catValu>
    <labl>Machibini</labl>
    <catStat type="invd"/>
  </catgry>
  <catgry>
    <catValu>3</catValu>
    <labl>Esiyembeni</labl>
  </catgry>
  <catgry>
    <catValu>4</catValu>
    <labl>Somkhele</labl>
  </catgry>
  <catgry>
    <catValu>5</catValu>
    <labl>Mpukunyoni</labl>
  </catgry>
  <catgry>
    <catValu>6</catValu>
    <labl>Mtubatuba</labl>
  </catgry>
  <catgry>
    <catValu>7</catValu>
    <labl>KwaMsane</labl>
  </catgry>
  <catgry>
    <catValu>8</catValu>
    <labl>Non-DSA clinic</labl>
  </catgry>
  <catgry>
    <catValu>9</catValu>
    <labl>Not recorded</labl>
  </catgry>
</var>
<var ID="V162" name="visitno" files="F6" intrvl="discrete">
  <varFormat type="numeric"/>
  <location width="10"/>
  <labl>ANC visit #</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="invd"/>
</var>
<var ID="V163" name="date" files="F6" intrvl="discrete">
  <varFormat type="character" formatname="Nesstar.date"/>
  <location width="11"/>
  <labl>Date of ANC visit</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="min">2014-09-10</sumStat>
  <sumStat type="max">2017-01-23</sumStat>
</var>
<var ID="V164" name="confv" files="F6" intrvl="discrete">
  <varFormat type="numeric"/>
  <location width="8"/>
  <labl>Was this ANC visit attended?</labl>
  <sumStat type="vald">11053</sumStat>
  <sumStat type="invd">4319</sumStat>
</var>
<var ID="V165" name="stepv" files="F6" intrvl="discrete">
  <varFormat type="numeric"/>
  <location width="9"/>
  <labl>Time step of visit</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="invd"/>
</var>
<var ID="V166" name="qib" files="F6" intrvl="discrete">
  <varFormat type="numeric"/>
  <location width="9"/>
  <labl>CQI exposure by 1st booked ANC clinic</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="invd"/>
</var>
<var ID="V167" name="clust1" files="F6" intrvl="discrete">
  <varFormat type="numeric"/>
  <location width="10"/>
  <labl>Cluster # by 1st booked ANC clinic</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="invd"/>
  <catgry>
    <catValu>1</catValu>
    <labl>Gunjaneni</labl>
    <catStat type="vald"/>
  </catgry>
  <catgry>
    <catValu>2</catValu>
    <labl>Mach+Esi</labl>
    <catStat type="invd"/>
  </catgry>
  <catgry>
    <catValu>3</catValu>
    <labl>Somkhele</labl>
  </catgry>
  <catgry>
    <catValu>4</catValu>
    <labl>Mpukunyoni</labl>
  </catgry>
  <catgry>
    <catValu>5</catValu>
    <labl>Mtuba</labl>
  </catgry>
  <catgry>
    <catValu>6</catValu>
    <labl>KwaMsane</labl>
  </catgry>
</var>
<var ID="V168" name="lastanc" files="F6" intrvl="discrete">
  <varFormat type="character" formatname="Nesstar.date"/>
  <location width="11"/>
  <labl>Last ANC visit date before delivery</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="min">2015-01-21</sumStat>
  <sumStat type="max">2017-01-23</sumStat>
</var>
<var ID="V169" name="dodeliv_c" files="F6" intrvl="discrete">
  <varFormat type="character" formatname="Nesstar.date"/>
  <location width="11"/>
  <labl>Date of delivery</labl>
  <sumStat type="vald">15372</sumStat>
  <sumStat type="min">2015-07-10</sumStat>
  <sumStat type="max">2017-01-23</sumStat>
</var>
<var ID="V170" name="outvltv" files="F6" intrvl="discrete">
  <varFormat type="numeric"/>
  <location width="9"/>
  <labl>VL outcome at ANC visit binary</labl>
  <sumStat type="vald">7445</sumStat>
  <sumStat type="invd">7927</sumStat>
</var>
<var ID="V171" name="outscrtv" files="F6" intrvl="discrete">
  <varFormat type="numeric"/>
  <location width="9"/>
  <labl>HIV rpt scr outcome at ANC visit binary</labl>
  <sumStat type="vald">6674</sumStat>
  <sumStat type="invd">8698</sumStat>
</var>
</dataDscr></codeBook>
