AHRI HDSS.RD05-18 ACDIS HIV 2021 DDI.RD05-18.ACDIS.HIV.2021 Nompumelelo Mkwanazi

Sweetness H Dube

Africa Health Research Institute Nesstar Publisher AHRI HDSS.RD05-18 ACDIS HIV 2021 RD05-18.ACDIS.HIV.2021 Dr Abraham Jacobus Herbst Prof. Willem Hanekom Prof. Janet Seeley Prof. Maryam Shahmanesh Dr. Guy Harling Dr. Mark Siedner

Thobeka Mngomezulu

Phumzile Dlamini

Lindiwe Sithole

Bonginkosi Ntimane

Njabulo Myeni

Eugene Ehlers

Eugene Prenzler

Brendan Gilbert

Sweetness Dube

Siyabonga Nxumalo

Dickman Gareta

Kathy Baisley

Africa Health Research Institute Nesstar Publisher Welcome Trust DSI-MRC South African Population Research Infrastructure Network v2.0.0 South Africa, Surveillance, Epidemiology, HIV, Population Cohort HIV, Population, Surveillance, HIV Incidence, HIV prevalence, Epidemiology, Africa, Demography, information systems, South Africa, KwaZulu-Natal, Medical, Population Intervention 2. Tanser F, Hosegood V, Bärnighausen T, Herbst K, Nyirenda M, Muhwava W, Newell C, Viljoen J, Mutevedzi T, Newell ML. Cohort Profile: Africa Centre Demographic Information System (ACDIS) and population-based HIV survey. Int J Epidemiol. 2008 Oct;37(5):956-62. doi: 10.1093/ije/dym211. Epub 2007 Nov 12. PMID: 17998242; PMCID: PMC2557060. 3. Iwuji CC, Orne-Gliemann J, Larmarange J, Balestre E, Thiebaut R, Tanser F, Okesola N, Makowa T, Dreyer J, Herbst K, McGrath N, Bärnighausen T, Boyer S, De Oliveira T, Rekacewicz C, Bazin B, Newell ML, Pillay D, Dabis F; ANRS 12249 TasP Study Group. Universal test and treat and the HIV epidemic in rural South Africa: a phase 4, open-label, community cluster randomised trial. Lancet HIV. 2018 Mar;5(3):e116-e125. doi: 10.1016/S2352-3018(17)30205-9. Epub 2017 Nov 30. 4. Siedner MJ, Harling G, Derache A, Smit T, Khoza T, Gunda R, Mngomezulu T, Gareta D, Majozi N, Ehlers E, Dreyer J, Nxumalo S, Dayi N, Ording-Jesperson G, Ngwenya N, Wong E, Iwuji C, Shahmanesh M, Seeley J, De Oliveira T, Ndung'u T, Hanekom W, Herbst K. Protocol: Leveraging a demographic and health surveillance system for Covid-19 Surveillance in rural KwaZulu-Natal. Wellcome Open Res. 2020 Aug 25;5:109. doi: 10.12688/wellcomeopenres.15949.2. PMID: 32802963; PMCID: PMC7424917.]]> South Africa 2. Tanser F, Hosegood V, Bärnighausen T, Herbst K, Nyirenda M, Muhwava W, Newell C, Viljoen J, Mutevedzi T, Newell ML. Cohort Profile: Africa Centre Demographic Information System (ACDIS) and population-based HIV survey. Int J Epidemiol. 2008 Oct;37(5):956-62. doi: 10.1093/ije/dym211. Epub 2007 Nov 12. PMID: 17998242; PMCID: PMC2557060. 3. Iwuji CC, Orne-Gliemann J, Larmarange J, Balestre E, Thiebaut R, Tanser F, Okesola N, Makowa T, Dreyer J, Herbst K, McGrath N, Bärnighausen T, Boyer S, De Oliveira T, Rekacewicz C, Bazin B, Newell ML, Pillay D, Dabis F; ANRS 12249 TasP Study Group. Universal test and treat and the HIV epidemic in rural South Africa: a phase 4, open-label, community cluster randomised trial. Lancet HIV. 2018 Mar;5(3):e116-e125. doi: 10.1016/S2352-3018(17)30205-9. Epub 2017 Nov 30. PMID: 29199100.]]> AHRI HDSS Individual surveillance eligible individuals All resident household members from AHRI's DSA who met eligibility criteria and gave informed consent for their surveillance participation. Surveillance data All individuals meeting the eligibility criteria described in the abstract Herbst, A. J., Hanekom, W., Seeley, J., Shahmanesh, M., Harling, G., & Siedner, M. (2025). AHRI HDSS.RD05-18 ACDIS HIV 2021 [Data set]. Africa Health Research Institute. DOI:https://doi.org/10.23664/RD05-18.ACDIS.HIV.2021 Access to the data requires accurate completion of the online data access application form accessible on the AHRI Data repository(<https://data.ahri.org/>). Data users are required to abide by the data use conditions stipulated on the application for access to the data. Failure to do so may result in their data access privileges being revoked by the Data Custodian. In order to recognise the effort and intellectual contributions of AHRI investigators in producing and curating the data, users of AHRI data must acknowledge the source of the data and abide by the terms and conditions under which the data is accessed and must cite the dataset in publication using the citation provided as part of this documentation. All analytical datasets published on the AHRI Data Repository are assigned digital object identifier (DOIs) and the DOIs can be found on the Data Repository under Study Description tab - Access policy. AHRI data users are required to always cite the dataset using the relevant DOI. RD05-18 ACDIS HIV 2021.NSDstat 32169 75 Nesstar 200801 Unique Internal Id of Individual 32169 0 17 258195 87334.38 59007.791 BMFStatusObservation Id 22597 9572 611623 634276 622952.985 6539.954 Sex 32143 26 1 Male 13580 2 Female 18563 9 Unknown 0 Sysmiss 26 Date of birth 32143 1798-01-01 2007-03-27 Visit Date 32163 2021-04-20 2022-04-22 Visit Type 22604 9565 1 Avoided Visit 0 2 Unsuccessful Visit 0 3 Regular Visit 15863 4 Special Task Visit 0 5 Problem Solving 0 6 Quality Control 0 7 Spot Check 0 8 Tracking 6741 9 Verbal Autopsy 0 10 Mapping Visit 0 11 Counselling Visit 0 12 Illness And Death 0 13 Bounded Structure Verification 0 30 Community Liaison Office Visit 0 92 Deprecated 0 93 Refused Visit 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 99 Missing 0 Sysmiss 9565 Visit Type 22604 0 Bounded Structure Id at the time of drawing elibility list 32169 0 11 92378 12234.194 17561.433 Population Intervention Programme Study Area 32169 0 1 South 32169 2 North 0 FormRefused 32114 55 1 Yes 2202 2 No 20403 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 9509 98 Don't know 0 99 Missing 0 Sysmiss 55 Form Refused By 22597 9572 1 Self 1986 2 Partner 34 3 HH head 95 4 BS owner 35 5 Other 44 97 Not applicable 20403 99 Missing 0 Sysmiss 9572 Form Refused By 22597 0 Form Refused By Other Specify 45 Premature Completion Reasons 4243 27926 1 Stay in currently Avoided BS/HH 0 2 Temporarily away for more than 2 months 0 3 Non-Functional BS 0 4 Reported Dead 420 5 Household dissolution 0 6 HH Migrated External 0 7 Household Migrations 0 8 HH Migrated Internal 0 9 OutMigrated 3532 10 Mentally Disabled 81 11 Migrated unknown destination 0 12 Non-Contact After Tracking 0 13 No HSE Informant 0 14 Refused Bundles 0 15 Refused HSE 0 16 Refused Tracking 0 17 Very Sick 0 96 Other Reason 210 97 Not applicable 0 Sysmiss 27926 Premature Completion Reason Name 9475 0 HIV Refused 22597 9572 1 Yes 8140 2 No 12263 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 2194 98 Don't know 0 99 Missing 0 Sysmiss 9572 HIV Refused By 22597 9572 1 Self 8143 2 Partner 0 3 HH head 0 4 BS owner 0 5 Other 0 97 Not applicable 14454 99 Missing 0 Sysmiss 9572 Person who refused HIV survey participation 22597 0 HIV Refused By Other Specify 0 0 HIV Test Consent 20403 11766 1 Consented 12262 2 Did not consent 8141 99 Missing 0 Sysmiss 11766 Specimen Stored Consent 20403 11766 1 Consented 15149 2 Did not consent 5254 99 Missing 0 Sysmiss 11766 Recontact in Future Consent 20403 11766 1 Consented 18619 2 Did not consent 1784 99 Missing 0 Sysmiss 11766 HIV Sample Available 22597 9572 1 Yes 12263 2 No,but there is a BMFStatusObs 10334 Sysmiss 9572 Unique HIV Specimen Identifier 12263 19906 1130251 1160551 1148602.566 8552.203 HIV Result 22597 9572 0 Negative 8659 1 Positive 3579 2 Indeterminate 25 3 Insufficient sample volume 0 4 Spurious (probably not this person) 0 5 Spurious negative(HIV reverse seroconversion) 0 6 Spurious positive(HIV reverse seroconversion) 0 93 Refused 0 97 Not applicable 10334 99 Missing 0 Sysmiss 9572 HIV FieldWorker 22597 0 Week Block 30763 0 Isigodi 32169 0 1 Banzaneni 0 2 Deprecated 0 3 Dukumbane 0 4 Dukuduku 0 5 Ebaswazini 2332 6 Egula (Hlabisa) 0 7 Egula (Mdletshe) 0 8 Ekuphisweni 0 9 Empembeni 0 10 Esiyembeni 860 11 Gunjaneni 1098 12 Hlabisa Mission 0 13 Hlambanyathi 0 14 Inhlawathi 0 15 Khalokazi 0 16 KwaMsane (Isigodi) 3627 17 KwaMsane (Township) 1518 18 KwaMseme 0 19 Kwahoho 723 20 Mabudeni 0 21 Mabhokweni 0 22 Machibini 2300 23 Macekeni 0 24 Macambini 646 25 Madondo 0 26 Mfekayi 0 27 Mgangatho 0 28 Mahunjini 375 29 Makhambane 71 30 Makopini 0 31 Mapheleni 1712 32 Mshaya 1142 33 Mthwadlana 0 34 Matshamnyama-East 0 35 Matshamhlophe 0 36 Matshamnyama-West 0 37 Mathunzi 0 38 Mvutshini 135 39 Madwaleni 3 40 Myeki 2682 41 Ncwabakazi 0 42 Ndlovu Village 1093 43 Ngondini 0 44 Nkundusi 0 45 Nkolokotho 2604 46 Nkombose 2713 47 Makhowe 0 48 Nomathiya 1245 49 Nompondo 0 50 Nqopheni 573 51 Nsolweni 1511 52 Mthekwini 0 53 Ogengele 1786 54 Ophondweni 489 55 Ophaphasi (Mdletshe) 0 56 Ophaphasi (Mpukunyoni) 931 57 Qakwini 0 58 Qunwane 0 59 Shikishela 0 60 Stezi 0 61 Sovane 0 994 Query 0 995 Default 0 996 Other 0 997 Not Applicable 0 998 Don't know 0 999 Missing 0 Name of Isigodi 32169 0 LocalArea 32169 0 1 African 59 2 Bhoboza 54 3 Bhedangaye 412 4 Bhekamandla 0 5 Bhokoza 0 6 Bhekuzulu 117 7 Bongumusa 0 8 Buya 382 9 Bonanyoni 0 10 Chwebeni 0 11 Cakula 45 12 Danyini 0 13 Dubelenkunzi 1518 14 Dibheni 0 15 Dukingane 73 16 Dlokodlweni 184 17 Ebhekani 71 18 Ebaswazini 980 19 Edutch 521 20 Egedeni 0 21 Esiphambanweni 0 22 Embotsheni 259 23 Embongolweni 0 24 Emambeni 51 25 Emathuneni 261 26 Enyakane 0 27 Esiphahleni 0 28 Esiqiwini 4 29 Esiyembeni 7 30 Ebethangwe 0 31 Ekuthokojeni 0 32 Etsheni 316 33 Edwalaneni 0 34 Ezinqaweni 278 35 Ezimpehlweni 121 36 Fukula 47 37 Gagwini 92 38 Gwabalanda 150 39 Gugulethu 510 40 Gotshi 0 41 Gunjaneni 1329 42 Gwebu 70 43 Hambanathi 0 44 Hluhluwe 0 45 Hlumisa 0 46 Hlazane 0 47 Igwedla 40 48 Indlovu 117 49 Kwamsane Reserve 2055 50 Kwamsane Township 0 51 Kwasqumbe 0 52 KwaMsane Township Central (W3) 398 53 KwaMsane Township North (W2) 557 54 KwaMsane Township South (W4) 558 55 Kwahoho 405 56 Kwagxaba 0 57 Kwayoung 0 58 Kwiliza 263 59 Maqaka 0 60 Mashaya 194 61 Mazala 0 62 Mabhensa 0 63 Mbomeni 61 64 Machibini 313 65 Mchakwini 0 66 Macambini 353 67 Mchachazo 86 68 Mdlambila 211 69 Mdolomba 202 70 Makhwela 0 71 Msengeni 0 72 Mfekayi 0 73 Mfolozi 200 74 Magodi 71 75 Mgasela 0 76 Magqayiza 48 77 Mgeza 33 78 Mahlabathini 20 79 Mahunjini 134 80 Majonijoni 110 81 Macijaq 0 82 Makhambane 0 83 Makhandeni 161 84 Mkhondweni 0 85 Mkhathazi 98 86 Mcakwaneni 205 87 Mlambo 0 88 Majamisa 0 89 Manandi 317 90 Mnyakaja 156 91 Mnyaba 132 92 Mgodla 0 93 Mapheleni 387 94 Mpukunyoni 59 95 Maqanda 0 96 Mshaya 680 97 Mtshongweni 56 98 Mtholo 189 99 Mtshengwana 0 100 Manyunyumbe 0 101 Mvutshini 0 102 Mganwini 0 103 Madwaleni 0 104 Machwetshana 333 105 Myeki 27 106 Mayiya 0 107 Mvananda 22 108 Manzamnandi 0 109 Mfolozaneni 0 110 Nyakane N 0 111 Nyakane S 0 112 Ncemane 0 113 Nondubela 214 114 Indlovu Village 974 115 Ngqimlana 0 116 Ngongolo 0 117 Ngodane 98 118 Ngutsheni 0 119 Nhlonyani 0 120 Ninela 152 121 Njiniwayo 0 122 Njojo 321 123 Nkonjane 6 124 Nkhobo 365 125 Nkundusi 0 126 Nkangala 167 127 Nkolokotho 131 128 Nkombose 1936 129 Nkodibe 347 130 Nkatha 497 131 Nkumbane 235 132 Nkwalini 141 133 Nkayeni 74 134 Nomathiya 395 135 Nompondo 0 136 Ngqumela 0 137 Nqaweni North 79 138 Nqaweni South 69 139 Nqumbo 15 140 Nsane 1720 141 Nkostini 0 142 Nsolweni 434 143 Ntandabantu 376 144 Ntiningwe 0 145 Ntungwana 83 146 Ntweni 450 147 Nkovuka 0 148 Nyalazi 73 149 Ogengele 256 150 Okhalanja 167 151 Ophondweni 3 152 Oqondweni 0 153 Payipini 0 154 Phaphamani 0 155 Phuzudele 0 156 Paradise 94 157 Qakwini 0 158 Qubuka 594 159 Sibomvu 25 160 Sgqogqogqweni 234 161 Shunqa 0 162 Shozi 0 163 Sivivanveni 0 164 Shikishela 0 165 Somkhele 1438 166 Sunjwaneni 348 167 Sobayeka 66 168 Sogceke 32 169 Sipheko 0 170 Swalihle 50 171 Sanyoka 0 172 Shayamoya 72 173 Tamu 277 174 Thandanani 781 175 Thenjana 0 176 Vezunyawo 123 177 Zibomvini 75 178 Zululiyaduma 67 179 Zimambeni 150 180 Zinkonjane 759 181 Zwelethu 44 9993 _refused 0 9994 _query 0 9995 _default 0 9996 _other 0 9997 _non applicable 0 9998 _don't know 0 9999 _missing 0 Name of Local Area 32169 0 Rapid HIV Test Consent 20403 11766 1 Yes 5394 2 No 15008 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 1 Sysmiss 11766 Conventional HIV Test Consent 20403 11766 1 Consented 12262 2 Did not consent 8141 99 Missing 0 Sysmiss 11766 Storage Consent 20403 11766 1 Consented 15149 2 Did not consent 5254 99 Missing 0 Sysmiss 11766 Recontact Sample Consent 20403 11766 1 Consented 0 2 Did not consent 0 99 Missing 20403 Sysmiss 11766 General Health Consent 20403 11766 1 Consented 18148 2 Did not consent 2255 99 Missing 0 Sysmiss 11766 Sexual Behaviour Consent 20403 11766 1 Consented 16142 2 Did not consent 4261 99 Missing 0 Sysmiss 11766 Recontac for QA Consent 20403 11766 1 Consented 0 2 Did not consent 0 99 Missing 20403 Sysmiss 11766 Recontact Other Info Consent 20403 11766 1 Consented 18619 2 Did not consent 1784 99 Missing 0 Sysmiss 11766 Fieldworker inform consent 20401 0 Do you use your cellphone for email 20403 11766 1 Yes 4567 2 No 11889 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 3947 Sysmiss 11766 Do you use your cellphone for social media such as WhatsApp, Facebook, Twitter, I 20403 11766 1 Yes 7152 2 No 9309 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 3942 Sysmiss 11766 Do you use your cellphone to search information on internet using search engines 20403 11766 1 Yes 6686 2 No 9764 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 3953 Sysmiss 11766 Do you use your cellphone for calls or texting? 20403 11766 1 Yes 15289 2 No 1187 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 3927 Sysmiss 11766 Do you use your cell phone for any financial services such as sending money, buyi 20403 11766 1 Yes 8168 2 No 8304 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 3931 Sysmiss 11766 Do you use your cellphone for games or entertainment such as YouTube? 20403 11766 1 Yes 5380 2 No 11067 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 3956 Sysmiss 11766 Do you use your cellphone for health tracking such as mom-connect and B-Wise, fit 20403 11766 1 Yes 2035 2 No 14365 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 4003 Sysmiss 11766 Was HIV Specimen Collected? 12270 19899 1 Yes 12264 2 No 6 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 0 Sysmiss 19899 Was Rapid Test Done? 5406 26763 1 Yes 5367 2 No 39 90 SpecialQuery 0 92 Deprecated 0 93 Refused 0 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 0 Sysmiss 26763 Was testing performed Individually or as a Couple? 20403 11766 1 Individual Rapid HIV Testing 5363 2 Couple Rapid HIV Testing 12 99 Missing 15028 Sysmiss 11766 AQ1 Rapid Test Result 20403 0 AQ2 Rapid Test Result 20403 0 Abon1 Rapid Test Result 20403 0 Abon2 Rapid Test Result 20403 0 Was Elisa Sample Collected? 4 0 Elisa Sample Date 3 2021-05-19 2022-03-09 Elisa HIV Test Result 20403 0 Was Elisa Sample Collec Rep 0 0 HIV Rapid Test Result 20403 11766 0 Negative 5255 1 Positive 112 2 Indeterminate 0 3 Insufficient sample volume 4 4 Spurious (probably not this person) 0 5 Spurious negative(HIV reverse seroconversion) 0 6 Spurious positive(HIV reverse seroconversion) 0 93 Refused 0 97 Not applicable 15000 99 Missing 32 Sysmiss 11766 Participant Already Attending Clinic 114 32055 1 Yes 19 2 No 93 90 SpecialQuery 0 92 Deprecated 0 93 Refused 2 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 0 Sysmiss 32055 Consent to record attendance at clini 20403 0 Consent to SMS contact (and choose message) 20403 0 Consent for a Phone Call 20403 0 Consent to access residual specimens (blood and tissue) from Department of Health 20403 0 Consent to access residual specimens (blood and tissue) from Department of Health 20403 0 Consent to be contacted in future on the basis of information obtained after link 20403 0 Consent for my children (under 18 years) to be contacted in future on the basis o 20403 0 Consent for my children (under 18 years) to be contacted in future on the basis o 20403 0 Have you ever received a test result for HIV? 20403 11766 1 Yes 14805 2 No 3176 90 SpecialQuery 0 92 Deprecated 0 93 Refused 175 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 2247 Sysmiss 11766 Have you ever had a positive HIV test result? 20403 11766 1 Yes 3495 2 No 14188 90 SpecialQuery 0 92 Deprecated 0 93 Refused 473 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 2247 Sysmiss 11766 Are you currently receiving ART? 20403 11766 1 Yes 3357 2 No 129 90 SpecialQuery 0 92 Deprecated 0 93 Refused 10 94 Query 0 95 Default 0 96 Other 0 97 Not Applicable 0 98 Don't know 0 99 Missing 16907 Sysmiss 11766 When was your first positive test result? 20403 11766 1 More than one year ago 88 2 Less than on year ago 3405 3 Never got the results 0 92 Deprecated 0 93 Refused 10 99 Missing 16900 Sysmiss 11766 When was your last negative test result? 20403 11766 1 More than one year ago 5294 2 Less than on year ago 10001 3 Never got the results 2861 92 Deprecated 0 93 Refused 0 99 Missing 2247 Sysmiss 11766 When did you first start ART? 20403 11766 1 More than one year ago 47 2 Less than on year ago 3258 3 Never got the results 0 92 Deprecated 0 93 Refused 0 99 Missing 17098 Sysmiss 11766 Where do you currently receive your ART from? 20403 11766 1 Clinic 0 2 Mobile clinic 0 3 NGO 0 4 Out side PIPSA 0 5 Pick up Point 0 6 Private doctor 0 92 _deprecated 0 93 Refuse 0 99 _missing 20403 Sysmiss 11766