iGugu_Main_Study_Data_PLOS Medicine AHRI.iGugu.Main.Study.Data.PLOS.Medicine Nompumelelo Mkwanazi

Sweetness H Dube

Africa Health Research Institute Nesstar Publisher iGugu_Main_Study_Data_PLOS Medicine AHRI.iGugu.Main.Study.Data.PLOS.Medicine Njabulo Dayi Dickman Gareta Nompumelelo Mkwanazi Shahmanesh M Francis SC Baisley K Mchunu SL Ferguson J Smit T Crucitti T Dlamini S Seeley J Pillay Deenan McGrath N Mthiyane TN Africa Health Research Institute Nesstar Publisher v1.0.0 South Africa Simple random sample of DSS residents aged 15-24 years, stratified by age group (15-19 and 20-24) and sex Access to the data requires accurate completion of the online data access application form accessible on the AHRI Data repository(<https://data.ahri.org/>). Data users are required to abide by the data use conditions stipulated on the application for access to the data. Failure to do so may result in their data access privileges being revoked by the Data Custodian. In order to recognise the effort and intellectual contributions of AHRI investigators in producing and curating the data, users of AHRI data must acknowledge the source of the data and abide by the terms and conditions under which the data is accessed and must cite the dataset in publication using the citation provided as part of this documentation. All analytical datasets published on the AHRI Data Repository are assigned digital object identifier (DOIs) and the DOIs can be found on the Data Repository under Study Description tab - Access policy. AHRI data users are required to always cite the dataset using the relevant DOI. Igugu_main_study_data_PLOS Medicine.NSDstat 447 58 Nesstar 200801 447 0 1001 1447 1224 129.182 Sex 447 0 1 Male 188 2 Female 259 Age group 447 0 1 15-19 248 2 20-24 199 In school? 446 1 0 No 143 1 Yes 303 Sysmiss 1 Inschool or working 447 0 0 No 131 1 Yes 316 Working? 446 1 0 No 412 1 Yes 34 Sysmiss 1 Highest level of education completed 447 0 1 Less than matric 302 2 Matric or higher 145 Socio-economic status 445 2 1 Low 197 2 Middle 110 3 High 138 Sysmiss 2 Ever smoked cigarette 445 2 0 No 406 1 Yes 38 3 Prefer not to answer 1 Sysmiss 2 Ever drunk one drink of alcohol 445 2 0 No 266 1 Yes 173 3 Prefer not to answer 6 Sysmiss 2 Ever used cannabis/dagga 446 1 0 No 427 1 Yes 19 3 Prefer not to answer 0 Sysmiss 1 Use other drugs 447 0 0 No 442 1 Yes 5 Ever been circumcised 188 259 0 No 92 1 Yes 96 3 Prefer not to answer 0 Sysmiss 259 Do you ever cleanse inside vagina? 258 189 0 No 214 1 Yes 41 3 Prefer not to answer 3 Sysmiss 189 Use hormonal contraception 259 188 0 No 219 1 Yes 40 Sysmiss 188 Currently using contraceptives 254 193 0 No 159 1 Yes 94 3 Prefer not to answer 1 Sysmiss 193 Have you ever had sex 443 4 0 No 215 1 Yes 216 3 Prefer not to answer 12 Sysmiss 4 Used condom last time you had sex? 220 227 0 No 116 1 Yes 98 3 Prefer not to answer 5 8 Don't remember 1 Sysmiss 227 Ever touched genitals 447 0 0 No 264 1 Yes 183 Oral sex (provide) 436 11 0 No 365 1 Yes 65 3 Prefer not to answer 6 Sysmiss 11 Oral sex (receive) 441 6 0 No 334 1 Yes 100 3 Prefer not to answer 7 Sysmiss 6 Ever had anal sex 440 7 0 No 419 1 Yes 14 3 Prefer not to answer 7 Sysmiss 7 Number of current sexual partners 414 33 0 None 215 1 One 177 2 Two or more 22 Sysmiss 33 Number of lifetime partners 407 40 0 None 215 1 One 85 2 Two or more 107 3 Prefer not to answer 0 Sysmiss 40 In sexual relationship for material 223 224 0 No 189 1 Yes 18 3 Prefer not to answer 16 Sysmiss 224 Violence-victim 441 6 0 No 396 1 Yes 37 93 Prefer not to answer 8 Sysmiss 6 Violence-perpetrator 440 7 0 No 409 1 Yes 19 93 Prefer not to answer 12 Sysmiss 7 Did partner discuss his/her HIV status with you? 222 225 0 No 104 1 Yes 106 3 Prefer not to answer 8 8 Don't remember 4 Sysmiss 225 Do you know his/her HIV status 222 225 0 No 107 1 Yes 109 3 Don't remember 1 4 Prefer not to answer 5 Sysmiss 225 Have you discussed your HIV status with your partner 220 227 0 No 80 1 Yes 116 3 Prefer not to answer 19 8 Don't remember 5 Sysmiss 227 Understand the study 432 15 0 100 12.197 28.949 Ease of understanding instructions for sample collection 417 30 0 100 12.859 28.893 Ease of sample collection 416 31 0 100 14.055 30.905 Felt comfortable 431 16 0 100 10.109 25 Felt in control 431 16 0 100 10.183 24.053 Felt relaxed 430 17 0 100 10.251 23.9 Was doing it correctly 425 22 0 100 7.078 18.416 Location was private 430 17 0 100 6.391 20.649 Was enxious 418 29 0 100 67.722 41.22 Was embarrassed 431 16 0 100 68.8 41.461 Was painful 430 17 0 100 86.398 29.465 Chlamydia 436 11 0 Negative 399 1 Positive 37 Sysmiss 11 Gonorrhoea 436 11 0 Negative 427 1 Positive 9 Sysmiss 11 Trichomonas vaginalis 436 11 0 Negative 421 1 Positive 15 Sysmiss 11 HSV-2 419 28 0 Negative 311 1 Positive 108 2 Indeterminate 0 Sysmiss 28 Bacterial vaginosis 239 208 0 Normal 112 1 Intermediate 25 2 BV 102 Sysmiss 208 Syphilis 422 25 0 Negative 416 1 Early/previous infection 5 2 Active 1 Sysmiss 25 Gonorrhoea or Chlamydia 436 11 0 Neg 391 1 Pos 45 Sysmiss 11 Any STI 436 11 0 No 376 1 Yes 60 Sysmiss 11 HIV status (2016 serosurvey) 230 217 0 Negative 194 1 Positive 36 Sysmiss 217 Any symptoms 447 0 0 No 372 1 Yes 75 Residence location 447 0 1 Urban 19 2 Peri-urban 155 3 Rural 273 Stratum 447 0 1 Males aged 15-19 124 2 Females aged 15-19 124 3 Males aged 20-24 64 4 Females aged 20-24 135 Sampling & non-response weight (normalised) 447 0 0.531 5.576 1.016 0.465 Sampling weight (normalised) 447 0 0.821 1.174 1 0.156 Preferred method of contact if negative 390 57 1 Telephone call 222 2 SMS 151 3 WhatsApp 17 Sysmiss 57 Preferred method of contact if positive 390 57 1 Telephone call 230 2 SMS 144 3 WhatsApp 16 Sysmiss 57 Has access to telephone? 447 0 0 No 57 1 Yes 390