DDI.AHRI.Vukuzazi.ClinicalData.2018.v1
Africa Health Research Institute
<_value>
NADA
Vukuzazi Machine Learning Chest X-ray project among individuals aged 15 years and above in rural KwaZulu Natal, South Africa, 2018.
AHRI.Vukuzazi.ClinicalData.2018.v1
Professor Deenan, Pillay
Dr Olivier, Koole
Dr. Emily, Wong
Dr. Kobus, Herbst
Dickman, Gareta
Jaco, Dreyer
Tumi, Madolo
Siyabonga, Nxumalo
Africa Health Research Institute
NADA
Wellcome Trust
097410/Z/11/Z
V1.0.0
Tuberculosis
Chest x-ray; machine learning; tuberculosis; population health screening
South Africa
uMkhanyakude district in northern KwaZulu-Natal
Survey Data
AHRI.Vukuzazi.ClinicaLData.2018.V1
1098
78
Unique Internal Id of Individual
1098
5
2288
1102.626
670.666
Gender
1098
1
Male
2
Female
9
Unknown
Individual's Date of Birth
1098
1922-10-12
2003-07-05
Individual age
1097
1
15
95
40.342
19.018
Mobile Clinic Visit Date
1098
2018-05-25
2018-08-31
Height in Cm
1098
13.5
196
161.533
11.135
Weight in Kg
1098
27.7
657
73.93
26.735
BP Second Systolic
1098
58
227
120.2
21.14
BP Second Diastolic
1098
34
164
74.53
14.001
BP Third Systolic
1098
76
219
118.773
20.909
BP Third Diastolic
1098
40
133
73.683
13.675
BP Forth Systolic
59
1039
92
228
161.712
30.734
1001
..
BP Forth Diastolic
1098
1000000001
..
Have you ever had a positive HIV test result?
931
167
1
Yes
2
No
3
NA
Sysmiss
CD4 Lymphocytes Abs
396
702
60
2156
714.919
338.027
10001
..
HBA1c
1082
16
23
154
38.948
12.876
1001
..
Liquid Culture Result(MGIT)
242
856
1
Negative MTB Not Isolated
2
Positive MTB Only(Mycobacterium Tuberculosis isolated)
3
Positive NTM Only
4
Culture Contaminated
5
Positive MTB And Contaminated(Mycobacterium Tuberculosis isolated)
6
Positive NTM And contaminated
7
Positive MTB And Positive NTM(Mycobacterium Tuberculosis isolated)
11
..
Sysmiss
MO Lung Field
1098
1
Normal Lung Fields
2
Abnormal Lung Fields
Cxr rMO Conclusion
1098
1
N = Normal
2
AD-NS = abnormality detected ? not significant
3
ADS-NA = abnormality detected, significant ? no active disease
4
ADS-NT = abnormality detected, significant ? not tuberculosis
5
ADS-TB = abnormality detected, significant ? tuberculosis
6
ADS-U = abnormality detected, significant ? unclassified
Cxr Radiologist Conclusion
1098
1
N = Normal
2
AD-NS = abnormality detected ? not significant
3
ADS-NA = abnormality detected, significant ? no active disease
4
ADS-NT = abnormality detected, significant ? not tuberculosis
5
ADS-TB = abnormality detected, significant ? tuberculosis
6
ADS-U = abnormality detected, significant ? unclassified
TB GeneXpert Test Result
242
856
1
MTB Not Detected
2
MTB Detected Very Low
3
MTB Detected Low
4
MTB Detected Medium
5
MTB Detected High
6
MTB Detected
11
..
Sysmiss
Radiologist Diagnostic ActiveTB
13
1085
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic OldTB
167
931
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic ProbableTB
4
1094
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic Other Infection
5
1093
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic Inflammatory Disorder
5
1093
1
Yes
2
No
3
NA
Sysmiss
Radiologistr Diagnostic Neoplasm
8
1090
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic Trauma
11
1087
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic CongenitalAbnormality
18
1080
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic CardiacDisorder
3
1095
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic VascularDisorder
59
1039
1
Yes
2
No
3
NA
Sysmiss
Radiologist Diagnostic Degenerative Disorder
4
1094
1
Yes
2
No
3
NA
Sysmiss
Radiologist TB Diagnostic Other
46
1052
1
Yes
2
No
3
NA
Sysmiss
Do you currently smoke any tobacco products, such as cigarettes, cigars or pipes?
1098
1
Yes
2
No
3
NA
Do you currently smoke tobacco products daily?
99
999
1
Yes
2
No
3
NA
Sysmiss
During any visit to a doctor or other health worker in the past 12 months, were y
99
999
1
Yes
2
No
3
NA
Sysmiss
In the past, did you ever smoke any tobacco products?
1098
1
Yes
2
No
3
NA
In the past, did you ever smoke daily?
51
1047
1
Yes
2
No
3
NA
Sysmiss
Have you consumed any alcohol within the past 30 days?
132
966
1
Yes
2
No
3
NA
Sysmiss
Are you currently on TB treatment?
1098
1
Yes
2
No
3
NA
If yes, have you received injections as part of this TB treatment?
11
1087
1
Yes
2
No
3
NA
Sysmiss
Have you been on TB treatment before?
1098
1
Yes
2
No
3
NA
If yes, how many times have you been on TB treatment?
146
952
1
2
3
4
6
8
9
Sysmiss
Date of completion of last TB treatment
1098
1
Yes
2
No
3
NA
Sysmiss
Has anyone in your homestead (or residential plot), during your lifetime
1098
1
Yes
2
No
3
NA
Is anybody in your homestead (or residential plot) currently on TB treatment?
1098
1
Yes
2
No
3
NA
Do you currently have a cough?
1098
1
Yes
2
No
3
NA
If yes, how long have you had the cough
56
1042
1
36
2.75
4.966
If yes, do you cough up sputum?
56
1042
1
Yes
2
No
3
NA
Sysmiss
Do you have a fever?
1098
1
Yes
2
No
3
NA
If yes, how long have you had a fever?
29
1069
1
Yes
2
No
3
NA
4
7
Sysmiss
Do you have drenching night sweats? (Sweating at night that soaks your clothes or
1098
1
Yes
2
No
3
NA
How long have you had drenching night sweats?
20
1078
1
Yes
2
No
3
NA
4
5
Sysmiss
Have you lost weight in the last 6 months?
1098
1
Yes
2
No
3
NA
How much weight have you lost in the last 6 months?
52
1046
1
Yes
2
No
3
NA
4
5
6
7
8
9
10
15
72
Sysmiss
Do you have any other symptoms apart from those already mentioned?
1098
1
Yes
2
No
3
NA
Have you ever been told by a doctor or other health worker that you have asthma o
1098
1
Yes
2
No
3
NA
Have you been told in the past 12 months?
40
1058
1
Yes
2
No
3
NA
Sysmiss
In the past two weeks, have you taken any medication for asthma/COPD prescribed b
40
1058
1
Yes
2
No
3
NA
Sysmiss
Do you have shortness of breath after exercise or physical activity?
366
732
1
Yes
2
No
3
NA
Sysmiss
Do you wake up at night because of difficulties in breathing/shortness of breath?
367
731
1
Yes
2
No
3
NA
Sysmiss
Do you experience wheezing at night?
367
731
1
Yes
2
No
3
NA
Sysmiss
When was your first positive test result?
Are you currently receiving ART?
303
795
1
Yes
2
No
3
NA
Sysmiss
Chext X-Ray
1098
10
100
29.83
15.509
Sputum Referral
7
1091
1
Sysmiss
Radiologist Lung Field
1098
1
Normal Lung Fields
2
Abnormal Lung Fields
Cxr Radiologist Diagnostic Other
7
AORTA UNFOLDED
CTR IS NORMAL
UNFOLDED AORTA
WELL CIRCUMSCRIBED RIGHT BASAL LESION WITH FLATTENED MEDIAL BORDER
SOFT TISSUE DENSITY
NO CALCIFICATION OR CAVITATION
CONSIDER HYDATID,SEQUESTRATION OR FOCAL EVENTRATION
CTR IS NORMAL.
CARDIO-MEDIASTINAL DISPLACEMENT TO THE RIGHT.
ELEVATED RIGHT DOME OF DIAPHRAGM.
COLON DISTENSION.
APPEARANCES COULD BE DUE TO EITHER EVENTRATION OR HERNIA.
ANY HISTORY OF INJURY???
THE LUNG FIELDS ARE CLEAR.
CTR IS NORMAL.
NORMAL CARDIO-MEDIASTINAL SILHOUTTE.
NO DISORDER OF PULMONARY VASCULARITY.
LUNG FIELDS ARE CLEAR.
NO PLEURAL ABNORMALITY NOTED
SUSPICIOUS ABNORMALITY RIGHT SUPRA-CLAVICULAR REGION.
??? TECHNICAL
RIGHT APICAL PLEURAL THICKENING
Right mid zone opacity, abutting the horizontal fissure.
This could be due to focal pleural thickening,fluid or upper lobe granuloma.
Tortuous unfolded aorta.
There is hyperinflation.
Right upper lobe calcification could be a calcified granuloma or projection from a rib.
An apical view is recommended.
Fatigue
8
1090
1
Yes
2
No
3
NA
Sysmiss
Haemoptysis
1
1097
1
Yes
2
No
3
NA
Sysmiss
Chest Pain
1098
1
Yes
2
No
3
NA
Sysmiss
Lymphadenitis
1098
1
Yes
2
No
3
NA
Sysmiss
HIV Viral Load Result
364
734
1
1200048
1
< 40
2
NOT DETECTED
10000001
..
HIV Elisa Result
1082
16
1
Positive
2
Negative
11
..
Sysmiss
Chest X Ray Image Study
1098
1000
2082
1544.713
314.574
Chest X Ray Image Series
1098
1
1098
549.5
317.11
Series Date
1098
2018-05-25
2018-08-31
Chest X Ray MD5 Harsh
1098