Derache, Anne

Africa Health Research Institute NADA PANGEA consortium, funded by the Bill & Melinda Gates Foundation V1.0.0 HIV full-length sequences; date of sampling; phylodynamics, phylogeny, HIV-1, ART history HIV-1; Incidence; Phylogeny; Epidemics; Population Surveillance; Rural Population; HIV Infections; Africa South Africa South Africa Clinical and Demographic data AHRI.PANGEA1.ART.2019.v1 71421 7 AHRI.PANGEA1.INDIVIDUALS.2019.v1 3890 15 AHRI.PANGEA1.LAB.2019.v1 19197 6 Pangea unique Identifier of Individual 71421 Date when antiretroviral therapy was initiated 70901 1928-04-24 2017-05-29 ART encounter or visit date 70901 1928-04-24 2018-02-14 ART regimen 63949 Date of ART end event 6440 2006-01-05 2018-08-07 Reasons for ART end event occuring 93 Entry Required Lipodystrophy Other Policy change Poor adherence Renal impairment TasP trial switch to Atripla Virological failure ARTEndEventType 5874 65547 1 Care changed 2 Care interrupted 3 Death 4 Transfer out 5 Lost to follow up Sysmiss Pangea unique Identifier of Individual 3890 Sample identifier 3890 A study a sample was taken from 3890 1 2 3 4 3890 ACDIS CC RES TasP Individual's Date of Birth 3890 1901-01-01 1999-11-16 Individual's age 3890 14 114 36.354 12.299 Gender 3889 1 1 Male 2 Female 9 Unknown Sysmiss Date when sample was taken 3890 2010-12-14 2016-09-14 Surveillance unique Identifier of Individual 2736 1154 84 218561 ARTemis unique Identifier of Individual 1343 2547 41 200695 Tier.Net unique Identifier of Individual 2574 1316 4 56761 TasP unique Identifier of Individual 2538 1352 9 100102 11738.361 8344.069 Date of last negative 304 2003-06-26 2017-11-22 Date of earliest positive 3879 2002-11-25 2017-09-12 Date of earliest known antiretroviral therapy 3585 1928-04-24 2017-03-01 Pangea unique Identifier of Individual 19197 Sample identifier 19197 Date when sample was processed 19197 2003-02-03 2017-08-10 CD4 Count value 13822 5375 4495 10001 .. CD4 Percentage value 4934 14263 66 101 .. Viral load value 15189 4008 11000000 100000001 ..