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    Home / Central Data Catalog / PANGEA / AHRI.PANGEA2.VUKUZAZI.CLINICALDATA.202102
PANGEA

AHRI.PANGEA2 Vukuzazi Clinical Data.Release 2021-02

South Africa, 2018 - 2020
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Reference ID
AHRI.PANGEA2.Vukuzazi.ClinicalData.202102
Producer(s)
Pillay, Deenan, ,
Collections
PANGEA 1
Metadata
Documentation in PDF DDI/XML JSON
Created on
Feb 16, 2021
Last modified
Feb 16, 2021
Page views
12191
Downloads
298
  • Study Description
  • Data Dictionary
  • Downloads
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  • Identification
  • Version
  • Scope
  • Coverage
  • Producers and sponsors
  • Sampling
  • Data collection
  • Data Access
  • Metadata production
  • Identification

    Survey ID number

    AHRI.PANGEA2.Vukuzazi.ClinicalData.202102

    Title

    AHRI.PANGEA2 Vukuzazi Clinical Data.Release 2021-02

    Country
    Name Country code
    South Africa ZA
    Abstract

    PANGEA is an international consortium of researchers based in Africa, the US and the UK studying transmission dynamics in HIV epidemics in sub-Saharan Africa. The goal of the consortium is to analyse HIV phylogenetic and demographic data to identify individual and population-level factors that drive the epidemic, analyse the
    dynamics of the epidemic and translate these findings into information that can be used to more effectively target interventions. PANGEA encompasses four analysis themes: (1) molecular epidemiology and mathematical modelling, (2) phylodynamics, (3) mobility and migration, and (4) clinical science, drug resistance and ethics. Social, Demographic and Clinical data will be used for these analysis.

    Kind of Data

    Clinical and Demographic Data

    Unit of Analysis

    NA Samples are not sequenced at AHRI, but shipped to the UK for sequencing.

    Version

    Version Description

    V3.0.0

    Scope

    Topics
    Topic Vocabulary URI
    HIV-1; Incidence; Phylogeny; Epidemics; Population Surveillance; Rural Population; HIV Infections; Africa Africa Health Research Institute AHRI
    Keywords
    Viremic Vukuzazi participants; date of sampling; phylodynamics, phylogeny, HIV-1, ART history

    Coverage

    Geographic Coverage

    South Africa

    Universe

    All Vukuzazi participants in the intervention area, in Umkhanyakude district.

    Producers and sponsors

    Primary investigators
    Name Affiliation
    Pillay, Deenan Africa Health Research Institute
    Producers
    Name
    Africa Health Research Institute
    Funding Agency/Sponsor
    Name Role
    Bill & Melinda Gates Foundation Genotyping funding source
    Other Identifications/Acknowledgments
    Name Affiliation
    Anne Derache Africa Health Research Institute
    Sweetness Dube Africa Health Research Institute
    Tshwaraganang Modise Africa Health Research Institute
    Dickman Gareta Africa Health Research Institute

    Sampling

    Sampling Procedure

    HIV positive individuals within the Vukuzazi study, enrolled from June 1st 2018 to 31st May 2019, with a VL >100 copies/ml.

    Data collection

    Dates of Data Collection
    Start End
    2018-05-25 2020-03-13

    Data Access

    Access conditions

    The representative of the Receiving Organization agrees to comply with the following conditions:

    1. Access to the restricted data will be limited to the Lead Researcher and other members of the research team listed in this request.
    2. Copies of the restricted data or any data created on the basis of the original data will not be copied or made available to anyone other than those mentioned in this Data Access Agreement, unless formally authorized by the Data Archive.
    3. The data will only be processed for the stated statistical and research purpose. They will be used for solely for reporting of aggregated information, and not for investigation of specific individuals or organizations. Data will not in any way be used for any administrative, proprietary or law enforcement purposes.
    4. The Lead Researcher must state if it is their intention to match the restricted microdata with any other micro-dataset. If any matching is to take place, details must be provided of the datasets to be matched and of the reasons for the matching. Any datasets created as a result of matching will be considered to be restricted and must comply with the terms of this Data Access Agreement.
    5. The Lead Researcher undertakes that no attempt will be made to identify any individual person, family, business, enterprise or organization. If such a unique disclosure is made inadvertently, no use will be made of the identity of any person or establishment discovered and full details will be reported to the Data Archive. The identification will not be revealed to any other person not included in the Data Access Agreement.
    6. The Lead Researcher will implement security measures to prevent unauthorized access to licensed microdata acquired from the Data Archive. The microdata must be destroyed upon the completion of this research, unless the Data Archive obtains satisfactory guarantee that the data can be secured and provides written authorization to the Receiving Organization to retain them. Destruction of the microdata will be confirmed in writing by the Lead Researcher to the Data Archive.
    7. Any books, articles, conference papers, theses, dissertations, reports, or other publications that employ data obtained from the Data Archive will cite the source of data in accordance with the citation requirement provided with the dataset.
    8. An electronic copy of all reports and publications based on the requested data will be sent to the Data Archive.
    9. The original collector of the data, the Data Archive, and the relevant funding agencies bear no responsibility for use of the data or for interpretations or inferences based upon such uses.
    10. This agreement will come into force on the date that approval is given for access to the restricted dataset and remain in force until the completion date of the project or an earlier date if the project is completed ahead of time.
    11. If there are any changes to the project specification, security arrangements, personnel or organization detailed in this application form, it is the responsibility of the Lead Researcher to seek the agreement of the Data Archive to these changes. Where there is a change to the employer organization of the Lead Researcher this will involve a new application being made and termination of the original project.
    12. Breaches of the agreement will be taken seriously and the Data Archive will take action against those responsible for the lapse if willful or accidental. Failure to comply with the directions of the Data Archive will be deemed to be a major breach of the agreement and may involve recourse to legal proceedings. The Data Archive will maintain and share with partner data archives a register of those individuals and organizations which are responsible for breaching the terms of the Data Access Agreement and will impose sanctions on release of future data to these parties.

    Metadata production

    DDI Document ID

    DDI.PANGEA2.Vukuzazi.ClinicalData.202102

    Producers
    Name
    Africa Health Research Institute
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