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AHRI.UMOYAOMUHLE.DATASETS
Infection prevention and control for drug-resistant tuberculosis in South Africa in the era of decentralised care:a whole systems approach
South Africa
,
2018 - 2019
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Reference ID
AHRI.UmoyaOmuhle.Datasets
Producer(s)
Govender, Indira
Metadata
Documentation in PDF
DDI/XML
JSON
Created on
Feb 15, 2022
Last modified
Feb 15, 2022
Page views
68383
Downloads
553
Study Description
Data Dictionary
Downloads
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Data files
AHRI.ClinicTBPrevalenceSurveyDataset.2021
AHRI.UmoyaOmuhleSocialContactsDataset.V2.2022
AHRI.UmoyaOmuhleSputumDataset.2021
Data file: AHRI.ClinicTBPrevalenceSurveyDataset.2021
Cases:
2055
Variables:
192
Variables
Unique_id
Individual Identifier
elig_samp_scryn
Did this person agree to be screened?
elig_samp_cl
Was this person sampled by ClinicLink?
elig_sex
Sex
elig_age
Age
elig_emerg
Are you here for an emergency?
elig_prev
Have you participated in this Umoya omuhle study before?
elig_capl
Based on the assessment above, are there any signals the participant lacks capac
ineligibility_reasons
Reasons for Ineligibility
ident_check
Please check the name and date of birth - is this the right participant?
elig_pis_lang
What is the participant's preferred language?
elig_pis_lit
Is the participant able to read and write?
elig_pis_wit1
If no, is the participant willing to be consented with a witness present?
elig_pis_wit2
Was a suitable witness found?
elig_agree
Does the patient agree to sign informed consent?
elig_bio_1
The sputum, TB isolates and TB genetic material can be stored for 20 years
elig_bio_2
The sputum, TB isolates and TB genetic material can be stored at the AHRI labs
elig_bio_3
The sputum, TB isolates and TB genetic material can be stored and used in future
elig_bio_4
The samples can be used by secondary bona fides researchers approved by BREC
elig_bio_5
I am willing to be re-contacted by the researcher/s about possible use of my sam
elig_bio_6
I have read the information, or it has been read to me. I have had the opportuni
elig_bio_7
I have been informed that I will be given information from the research team con
sput1_yn
Was a research sputum specimen obtained?
sput1_send
Is the specimen suitable for sending to the laboratory?
sput1_barcode
Scan specimen barcode
muac
Mid-upper arm circumference
name_cl_check2
Is the participant's name correct and spelt correctly?
dob_cl_check2
Is the participant's date of birth correct?
name_man_check2
Is the participant's name correct and spelt correctly?
dob_man_check2
Is the participant's date of birth correct?
loc_phone1_shared
Is this phone shared?
loc_phone1_message
Are you willing to be called and receive messages on this phone?
loc_phone1_verified
Has this phone number been verified during the visit?
loc_cob
What is your country of birth?
loc_saidno1
Do you have an SA ID number?
loc_contact
Does the participant have someone we can contact with their results?
loc_c1_rel
Relationship of contact 1 to participant
loc_c1_address_same
Is this physical address for this contact the same as the participant's address?
reasons
Reasons for visiting clinic today?
nvisits
How many times have you been to this clinic in the last month for any reason, in
cill_cough
Do you currently have cough?
cill_cough_duration
If yes, how long have had the cough?
cill_fever
Do you currently have fever?
cill_fever_duration
If yes, how long have had the fever?
cill_ntsweats
Do you currently have drenching night sweats?
cill_ntsweats_duration
If yes, how long have had the night sweats?
cill_wtloss
Have you unintentionally lost weight?
cill_wtloss_duration
If yes, how long have you been losing weight?
cill_sympt
Do you have any other symptoms?
cill_symptlist___1
Specify which other symptoms you have - choose all that apply (Coughing up blood
cill_symptlist___2
Specify which other symptoms you have - choose all that apply (Chest pain)
cill_symptlist___3
Specify which other symptoms you have - choose all that apply (Difficulty breath
cill_symptlist___4
Specify which other symptoms you have - choose all that apply (Loss of appetite)
cill_symptlist___5
Specify which other symptoms you have - choose all that apply (Tiredness)
cill_symptlist___6
Specify which other symptoms you have - choose all that apply (Nausea)
cill_symptlist___7
Specify which other symptoms you have - choose all that apply (Vomiting)
cill_symptlist___8
Specify which other symptoms you have - choose all that apply (Diarrhoea)
cill_symptlist___9
Specify which other symptoms you have - choose all that apply (Abdominal pain)
cill_symptlist___10
Specify which other symptoms you have - choose all that apply (Headache)
cill_symptlist___11
Specify which other symptoms you have - choose all that apply (Back pain)
cill_symptlist___12
Specify which other symptoms you have - choose all that apply (Joint pain)
cill_symptlist___13
Specify which other symptoms you have - choose all that apply (Swollen glands)
cill_symptlist___96
Specify which other symptoms you have - choose all that apply (Other, specify)
cill_help
Where did you first go to get help for these symptoms?
cill_rifafour
Are you currently on TB treatment?
cill_rxcard
If yes, do you have your TB treatment card?
tbrx_dsdrtb
From the treatment card - drug sensitive or drug resistant TB
tbrx_current
From the treatment card - where is treatment currently being collected?
qtp_inj
Question to participant - are you or did you ever get daily injections for curre
qtp_options
Question to participant - what TB treatment are you on?
qtp_current
Question to participant - where are you currently collecting your TB treatment f
cill_tbsputa
Have you ever given a sputum specimen to be tested for TB?
cill_tbsputa_year
TB test - Year
cill_tbsputa_month
TB test - Month
cill_sputum_result2
What was the result of your sputum TB test?
pasttbhx_rx
Have you ever been treated for TB before in your life?
pasttbhx_no
How many times have you been treated for TB?
pastdrtb_rx
Did you ever get injections for treatment of TB in your life?
hiv_test
Have you ever had an HIV test for which you know the result?
hiv_status
Confidential self-report: What is your HIV status?
hiv_postest
Confidential self-report: Are you currently taking anti-retroviral therapy (ARVs
sput2_res1yn
Was a research sputum specimen obtained at the first attempt?
sput2_tbsx
Did the patient report any symptoms of TB? (e.g., cough, night sweats, fever, we
sput2_res_yn
Was a research sputum specimen obtained?
sput2_res_suit
Is the research specimen suitable for sending to the laboratory?
sput2_barcode
Scan specimen barcode
sput2_doh_yn
Was a routine (DoH) sputum specimen obtained?
sput2_doh_barcode
Scan DoH specimen barcode
sput2_end_yn
Have all sputum samples been packed away and the relevant paperwork completed?
cna_r1cf_pptcheck
Please check the details above - is this the right participant
cna_r1cf_cfyn
Were you able to find a clinic file for this participant?
cna_r1cf_try3
Is this the THIRD time you have not found the clinic file? (Please double-check
cna_r1cf_snameyn
Is the surname in the file spelt exactly the same as the surname listed above?
cna_r1cf_sname_no
By how many letters does the spelling of the surname in the file differ from wha
cna_r1cf_fnameyn
Is the first name in the file spelt exactly the same as the first name listed ab
cna_r1cf_fname_no
By how many letters does the spelling of the first name in the file differ from
cna_r1cf_dobyn
Is the date of birth in the file exactly the same as the date listed above?
cna_r1cf_dob_no
How does the date of birth in the file differ from what is listed above?
cna_r1cf_fileyn
Is the number on the file exactly the same as the file number listed above?
cna_r1cf_discuss
Did you double-check or discuss this with a file clerk or another member of the
cna_r1cf_denrol_check
Is this the correct date of enrolment?
cna_r2cf_r1cna_yn
Was the Round 1 CNA (clinic file review) completed?
cna_r2cf_dr1cna_check
Is this the correct date of the Round 1 CNA (clinic file review)?
cna_r1cf_rfvenrol
According to the clinic file, what was the main reason for visiting the clinic o
cna_r1cf_cxryn
Is there evidence that the patient was referred for a chest x-ray or to the hosp
cna_r1cf_cxrresyn
Is there a formal report or a documented result from the chest x-ray?
cna_r2cf_sput_yn
Is there evidence in the clinic file that the patient had a sputum sent for a TB
cna_r2cf_sput1_barcode
Please scan the barcode of the sputum sample
cna_r2cf_sput2_yn
Is there evidence in the clinic file that the patient had a second sputum sent f
cna_r2cf_sput2_barcode
Please scan the barcode of the second sputum sample
cna_r2cf_sput3_yn
Is there evidence in the clinic file that the patient had a third sputum sent fo
cna_r2cf_sput3_barcode
Please scan the barcode of the third sputum sample
cna_r2cf_sput4_yn
Is there evidence in the clinic file that the patient had a fourth sputum sent f
cna_r2cf_sput4_barcode
Please scan the barcode of the fourth sputum sample
cna_r2cf_sput5_yn
Is there evidence in the clinic file that the patient had fifth a sputum sent fo
cna_r2cf_sput5_barcode
Please scan the barcode of the fifth sputum sample
cna_r1cf_tbrxyn
Is there evidence in the clinic file that the patient is on TB treatment?
cna_r1cf_dtbrxyn
Is the date of TB treatment start recorded?
cna_r1cf_tbrxreg
Please select the treatment regimen
cna_r1cf_hivtest
Is there evidence that the patient has had an HIV test?[OBSOLETE_02Nov2018]
cna_r1cf_hivresult
Is the most recent HIV test result positive or negative?[OBSOLETE_02Nov2018]
cna_r2cf_hivtest_pos_yn
Is there evidence tha the participant has had a POSITIVE HIV test?
cna_r2cf_hivtest_neg_yn
Is there evidence that the participant has had a NEGATIVE HIV test?
cna_r1cf_cd4yn
Is there evidence of a CD4 count?
cna_r1cf_cd4
Please record the most recent CD4 count
cna_r1cf_vlyn
Is there evidence of a viral load?
cna_r1cf_vl
Please record the most recent viral load
cna_r1cf_arv
Is there evidence that the patient is currently taking ARVs?
cna_r1cf_darvyn
Is the date of starting ARVs recorded?
cna_r1cf_arvreg
Please select the ART regimen
cna_r1sp_pptcheck
Please check the details above - is this the right participant?
cna_r1sp_denrol_check
Is this the correct date of enrolment?
cna_r1sp_spyn
Were you able to find the sputum register(s) for the period 3 months before the
cna_r1sp_try3
Is this the THIRD time you have not found the appropriate sputum register(s)? (P
cna_r1sp_sputyn
Is there a record of this participant having sputum sent for a TB test?
cna_r1sp_snameyn
Is the surname in the file spelt exactly the same as the surname listed above?
cna_r1sp_sname_no
By how many letters does the spelling of the surname in the file differ from wha
cna_r1sp_fnameyn
Is the first name in the file spelt exactly the same as the first name listed ab
cna_r1sp_fname_no
By how many letters does the spelling of the first name in the file differ from
cna_r1sp_dobyn
Is the date of birth in the file exactly the same as the date listed above?
cna_r1sp_dob_no
How does the date of birth in the file differ from what is listed above?
cna_r1sp_fileyn
Is the number on the file exactly the same as the file number listed above? (If
cna_r1sp_discuss
Did you double-check or discuss this with a file clerk or another member of the
cna_r1sp_1_gxpres
GenXpert result
cna_r1sp_1_gxprifres
GenXpert RIFAMPICIN result
cna_r1sp_1_smrres
Microscopy (AFB/Smear) result
cna_r1sp_1_cultyn
Was sputum sent for culture/LPA?
cna_r1sp_1_cultres
Culture result
cna_r1sp_1_lpayn
Was LPA/DST done?
cna_r1sp_1_lparif
Drug resistance result - RIF
cna_r1sp_1_lpainh
Drug resistance result - INH
cna_r1sp_1_tbrxyn
Is there a record of TB treatment being started?
cna_r1sp_1_sput_o
Any other sputum results found for this participant within the 3 month review pe
cna_r1sp_2_gxpres
GenXpert result
cna_r1sp_2_gxprifres
GenXpert RIFAMPICIN result
cna_r1sp_2_smrres
Microscopy (AFB/Smear) result
cna_r1sp_2_cultyn
Was sputum sent for culture/LPA?
cna_r1sp_2_cultres
Culture result
cna_r1sp_2_lpayn
Was LPA/DST done?
cna_r1sp_2_lparif
Drug resistance result - RIF
cna_r1sp_2_lpainh
Drug resistance result - INH
cna_r1sp_2_tbrxyn
Is there a record of TB treatment being started?
cna_r1sp_2_sput_o
Any other sputum results found for this participant within the 3 month review pe
cna_r1sp_3_gxpres
GenXpert result
cna_r1sp_3_gxprifres
GenXpert RIFAMPICIN result
cna_r1sp_3_smrres
Microscopy (AFB/Smear) result
cna_r1sp_3_cultyn
Was sputum sent for culture/LPA?
cna_r1sp_3_cultres
Culture result
cna_r1sp_3_lpayn
Was LPA/DST done?
cna_r1sp_3_lparif
Drug resistance result - RIF
cna_r1sp_3_lpainh
Drug resistance result - INH
cna_r1sp_3_tbrxyn
Is there a record of TB treatment being started?
cna_r1sp_3_sput_o
Any other sputum results found for this participant within the 3 month review pe
cna_r1sp_4_gxpres
GenXpert result
cna_r1sp_4_gxprifres
GenXpert RIFAMPICIN result
cna_r1sp_4_smrres
Microscopy (AFB/Smear) result
cna_r1sp_4_cultyn
Was sputum sent for culture/LPA?
cna_r1sp_4_cultres
Culture result
cna_r1sp_4_lpayn
Was LPA/DST done?
cna_r1sp_4_lparif
Drug resistance result - RIF
cna_r1sp_4_lpainh
Drug resistance result - INH
cna_r1sp_4_tbrxyn
Is there a record of TB treatment being started?
cna_r1sp_4_sput_o
Any other sputum results found for this participant within the 3 month review pe
cna_r1sp_5_gxpres
GenXpert result
cna_r1sp_5_gxprifres
GenXpert RIFAMPICIN result
cna_r1sp_5_smrres
Microscopy (AFB/Smear) result
cna_r1sp_5_cultyn
Was sputum sent for culture/LPA?
cna_r1sp_5_cultres
Culture result
cna_r1sp_5_lpayn
Was LPA/DST done?
cna_r1sp_5_lparif
Drug resistance result - RIF
cna_r1sp_5_lpainh
Drug resistance result - INH
cna_r1sp_5_tbrxyn
Is there a record of TB treatment being started?
Total: 192
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