AMETHIST RDS Clinical Data

South Africa, 2021 - 2023

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Reference ID

AHRI.AMETHIST.RDS.Clinical.Data

Producer(s)

Lusanda Mazibuko, Jaco Dreyer, Nompumelelo Mkwanazi, Prof. Maryam Shahmanesh

Metadata

Documentation in PDF DDI/XML JSON

Created on

May 25, 2026

Last modified

May 25, 2026

Page views

1312

Data file: AHRI.AMETHIST.CM.Clinical.Management.2025.v01

Cases:	71
Variables:	433

Variables

id_record

Internal Individual ID

event_id

REDCap Event Identifier

instance

REDCap Instance Identifier

event_name

REDCap Event Identifier Name

mt_date_time

Date/time

mt_staff_code

Staff Member Code

mt_has_correct_info

Please review the Personal Information above with the Participant.Is all of the

si_sch_curr_visit_done

Is the current visit scheduled with the participant?

si_sch_curr_visit_nd_reas

What is the reason for not scheduling an initial visit?

si_sch_curr_visit_nd_oth

Describe details for other reason

si_curr_staff_code

Staff Code

si_curr_visitdate

What is the Scheduled Visit Date?

si_curr_clinic_name

Which Clinic will the participant visit?

si_curr_comments

Please provide reasons for the visit or any additional information that can help

ls_staff_code

Staff Code

ls_clinic_attended

Did the participant attend the clinic for this visit ([event-label])?

ls_visit_type

Is this a visit scheduled or unscheduled?

ls_services_requested

What are the main reasons for visiting the Clinic, which services did the partic

ls_services_requested_1

What are the main reasons for visiting the Clinic, which services did the partic

ls_services_requested_2

What are the main reasons for visiting the Clinic, which services did the partic

ls_services_requested_3

What are the main reasons for visiting the Clinic, which services did the partic

ls_services_requested_4

What are the main reasons for visiting the Clinic, which services did the partic

ls_services_requested_5

What are the main reasons for visiting the Clinic, which services did the partic

ls_services_requested_6

What are the main reasons for visiting the Clinic, which services did the partic

ls_services_requested_96

What are the main reasons for visiting the Clinic, which services did the partic

ls_services_req_osp

Please specify the other service that the participant requested:

pv_clinic_name

What is the name of the Clinic?

pv_latitude

GPS - Latitude

pv_longitude

GPS - Longitude

pv_clinic_location

Location / Isigodi where participant was met

pv_clinic_location_oth

Please specify detail of the Other Location / Isigodi where participant was met

pv_verify_partic

Personal Information Value First Name/s: [personal_informati_arm_1][up_firstname

pv_visit_date

Visit Date

pv_staff_code

Staff Code

pv_calc_age

Participant's ageCalculated from Date of Birth ([personal_informati_arm_1][up_do

pv_nurse_verify_partic

Personal Information Value First Name/s: [personal_informati_arm_1][up_firstname

pv_staff_code_v2

Staff Code

hw_measure_taken

Was measurements taken at this visit?

hw_measure_nd_reas

Please provide a reason why the height and weight measurements were not done

hw_staff_code

Staff Code

hw_height

Record height (cm)

hw_weight

Record weight (kg)

hw_calc_bmi

Calculated BMI

ac_assess_done

Was the participant's capability to consent assessed at this visit?

ac_staff_code

Staff Code

ac_interview_datetime

Date/Time - Assessment of Capacity

ac_assess_step1

HAPPY with Step 1?

ac_assess_step2

HAPPY with Step 2?

ac_assess_step3

HAPPY with Step 3?

ac_assess_result

Is this individual capable to participate?

ac_nocapacity_desc

Please provide a detailed description of why this participant is not capable to

ic_hiv_request_to_test

Did the participant requested a HIV Rapid test?

ic_hiv_staff_code

Staff Code

ic_hiv_starttime

Informed consent for HIV Test - Start time

ic_hiv_know_status

Imvume yokuhlolelwa igciwane leSandulela-Ngculazi okusheshayo ukuze wazi isimo s

ic_hiv_clinic_attend

Imvume yerekhodi lokuhambela emtholampilo Consent to record attendance at clinic

ic_hiv_sms_contact

Imvume yokuthola ama-SMS okuxhunyanwa ngawo (bese sikhetha umyalezo) Consent to

ic_hiv_phone_contact

Imvume yokuthola izingcingo ezishayiwe Consent to phone call

ic_hiv_volunteersign01

Isignesha yevolontiya KUBANTU ABANGAKWAZI UKUBHALA MAKA NGO- 'X' Volunteer Signa

ic_hiv_volunteername01

Isignesha yevolontiya Phrinta igama kanye nesibongo Volunteer Name

ic_hiv_literate

Is the participant literate (able to read and write)?

ic_hiv_willing_witness

Is the illiterate participant willing to have a witness present?

ic_hiv_witnesssign01

Isignesha kafakazayo (uma ongenelayo engakwazi ukubhala nokufunda) ethi: "Ngifak

ic_hiv_witnessname01

Isignesha kafakazi Phrinta igama kanye nesibongo Witness Name

ic_hiv_staffsign01

Isignesha yelunga lomsebenzi Staff member Signature

ic_hiv_staffname01

Igama lelunga lomsebenzi oqhube imvume (phrinta) Staff member Name

ic_hiv_stoptime

Informed consent for HIV Test - Stop time

hr_rapidtest_done

Was Rapid HIV test done?

hr_no_rapidtest_reas

Please specify the reason for not performing the HIV Rapid Test:

hr_staff_code

Staff Code

mh_interview_starttime

Please record Date/Time for starting - Managing HIV Results

mh_staff_code

Staff Code

mh_rapidscreen_testtype

Rapid Screening Test Type

mh_rapidscreen_lotnum

What was the LOT number for the test kit?

mh_rapidscreen_result

What is the Rapid HIV test result?

mh_rapidscreen_lotnum_rep

What was the LOT number for the test kit?

mh_rapidscreen_result_rep

What is the Rapid HIV test result?

mh_rapidconf1_testtype

Rapid Confirmatory Test Type

mh_rapidconf1_lotnum

What was the LOT number for the test kit?

mh_rapidconf1_result

What is the Rapid HIV test result?

mh_rapidconf1_lotnum_rep

What was the LOT number for the test kit?

mh_rapidconf1_result_rep

What is the Rapid HIV test result?

mh_rapidtest_result

Confirm the Summary HIV test result?

mh_init_art

Is the participant going to be initiated on ART?

mh_not_init_art_reas

Please specify the reason why the participant will not be initiated on ART?

mh_interview_stoptime

Please record Date/Time for stopping - Managing HIV Results

rs_hiv_rapid_result

HIV Rapid Test Result

rs_dbs_hiv_result

DBS - HIV Result

rs_dbs_vl_result

DBS - Viral load Result

rs_init_art

Did the participant requested to be initiated on ART?

rs_not_init_art_reas

Please specify the reason why the participant did not asked to be initiated on A

rs_sti_result_ct

Result of STI Test - Chlamydia trachomatis

rs_sti_result_ng

Result of STI Test - Neisseria gonorrhoeae

rs_sti_result_tv

Result of STI Test - Trichomonas vaginalis

rs_sti_result_discussed

Was the result of the STI Test discussed with the participant?

rs_sti_need_partn_notify

Does the participant have any partners that would need notification letters?

rs_sti_partn_card_1

Issue partner notification card - 01

rs_sti_partn_card_2

Issue partner notification card - 02

rs_sti_partn_card_3

Issue partner notification card - 03

rs_sti_partn_card_4

Issue partner notification card - 04

rs_sti_partn_card_5

Issue partner notification card - 05

rs_sti_partn_card_6

Issue partner notification card - 06

rs_sti_partn_card_7

Issue partner notification card - 07

rs_sti_partn_card_8

Issue partner notification card - 08

rs_sti_partn_card_9

Issue partner notification card - 09

rs_sti_partn_card_10

Issue partner notification card - 10

rs_sti_counsel_done

Please tick which counseling topic were done:

rs_sti_counsel_done_1

Please tick which counseling topic were done: - Promote good sexual health

rs_sti_counsel_done_2

Please tick which counseling topic were done: - Fertility desires

rs_sti_counsel_done_3

Please tick which counseling topic were done: - Discuss nutrition

rs_sti_staff_code

Staff Code

rs_sti_treatm_provided

If positive, were treatment given?

hc_done_tests

Was point of care tests performed on the participant?

hc_staff_code

Staff Code

hc_starttime

Point of Care Test - Start time

hc_hepb_test_done

Was a Hepatitis B test done?

hc_hepb_test_lotnr

Hepatitis B Lot Number

hc_hepb_test_expdt

Hepatitis B Expiry Date

hc_hepb_result

Hepatitis B Result

hc_hepb_test_nd_reas

Please provide a reason for why the Hepatitis B test was not done

hc_creat_test_done

Was a Creatinine test done?

hc_creat_test_lotnr

Creatinine Lot Number

hc_creat_result

Creatinine Result

hc_creat_test_nd_reas

Please provide a reason for why the Creatinine test was not done

pc_starttime

Point of Care Test - Start time

pc_staff_code

Staff Code

pc_reviewed_hiv_result

Have you reviewed the HIV Rapid Test Result?

pc_reviewed_hepb_result

Have you reviewed the Hepatitis B Test Result?

pc_reviewed_creat_result

Have you reviewed the Creatinine Clearance Test Result?

pc_preg_test_done

Was a Pregnancy test done?

pc_preg_test_lotnr

Pregnancy Test Lot Number

pc_preg_result

Pregnancy test Result

pc_preg_test_nd_reas

Please provide a reason for why the Pregnancy test was not done

pc_rep_preg_test_done

Was a Repeat Pregnancy test done?

pc_rep_preg_test_lotnr

Repeat Pregnancy Test Lot Number

pc_rep_preg_result

Repeat Pregnancy test Result

pc_rep_preg_test_nd_reas

Please provide a reason for why the Repeat Pregnancy test was not done

pc_gluc_test_done

Was a Rapid Glucose test done?

pc_gluc_test_lotnr

Rapid Glucose Test Lot Number

pc_gluc_result

Glucose Test Result

pc_rep_gluc_test_nd_reas

Please provide a reason for why the Rapid Glucose test was not done

pc_syphilis_test_done

Was a Rapid Syphilis test done?

pc_syphilis_test_lotnr

Rapid Syphilis Test Lot Number

pc_syphilis_result

Syphilis Test Result

pc_syphilis_test_nd_reas

Please provide a reason for why the Syphilis test was not done

pc_urin_test_done

Was a Urinalysis test done?

pc_urin_test_lotnr

Urinalysis Test Lot Number

pc_urin_result_leuk

Urinalysis Leukocytes Result

pc_urin_result_nit

Urinalysis Nitrites Result

pc_urin_result_urob

Urinalysis Urobilinogen Result

pc_urin_result_prot

Urinalysis Protein Result

pc_urin_result_blood

Urinalysis Blood Result

pc_urin_result_specg

Urinalysis Specific Gravity Result

pc_urin_result_ketone

Urinalysis Ketone Result

pc_urin_result_bilir

Urinalysis Bilirubin Result

pc_urin_result_gluc

Urinalysis Glucose Result

pc_urin_test_nd_reas

Please provide a reason for why the Urinalysis test was not done

pc_stoptime

Point of Care Test - Stop time

vs_exam_done

Was the participant's Vital Signs measured and Physical examination done?

vs_exam_nd_reas

Please provide a reason for why vital signs measurements and physical examinatio

vs_staff_code

Staff Code

vs_starttime

Vitals - Start time

vs_meas_temp

Was Temperature measured?

vs_heart_temp

Temperature (Degrees Celsius)

vs_meas_heart_rate

Was Heart Rate measured?

vs_heart_rate

Record Heart Rate (bpm)

vs_meas_bp

Was Blood Pressure measured?

vs_r1_bp_sys

First BP Reading - Systolic

vs_r1_bp_dia

First BP Reading - Diastolic

vs_meas_2nd_bp

Is a 2nd Blood Pressure measurement needed?

vs_r2_bp_sys

Second BP Reading - Systolic

vs_r2_bp_dia

Second BP Reading - Diastolic

vs_final_bp_sys

Final BP Reading - Systolic

vs_final_bp_dia

Final BP Reading - Diastolic

vs_pe_nerve

Central Nervous System

vs_pe_nerve_abn

Specify abnormality for: Central Nervous System

vs_pe_cardio

Cardiovascular System

vs_pe_cardio_abn

Specify abnormality for: Cardiovascular System

vs_pe_resp

Respiratory System

vs_pe_resp_abn

Specify abnormality for: Respiratory System

vs_pe_gastro

Gastrointestinal System

vs_pe_gastro_abn

Specify abnormality for: Gastrointestinal System

vs_pe_skin

Skin

vs_pe_skin_abn

Specify abnormality for: Skin

vs_pe_joints

Joints

vs_pe_joints_abn

Specify abnormality for: Joints

vs_stoptime

Vitals - Stop time

cs_screen_done

Was the participant clinically screened?

cs_screen_nd_reas

Please provide the reason why the participant was not clinically screened?

cs_staff_code

Staff Code

cs_starttime

Clinical Screening - Start time

cs_symptoms_done

Was Reproductive Tract Symptoms done?

cs_symptoms

Do you have any of the following symptoms?

cs_symptoms_0

Do you have any of the following symptoms? - No symptoms

cs_symptoms_1

Do you have any of the following symptoms? - Pain passing urine

cs_symptoms_2

Do you have any of the following symptoms? - Vaginal discharge

cs_symptoms_3

Do you have any of the following symptoms? - Lower abdominal pain

cs_symptoms_4

Do you have any of the following symptoms? - Genitals blisters or sores

cs_symptoms_5

Do you have any of the following symptoms? - Genitals lumps and bumps

cs_symptoms_6

Do you have any of the following symptoms? - Urethral discharge (men)

cs_symptoms_7

Do you have any of the following symptoms? - Swelling in the groin

cs_symptoms_8

Do you have any of the following symptoms? - Genital itching

cs_symptoms_9

Do you have any of the following symptoms? - Scrotal swelling

cs_symptoms_96

Do you have any of the following symptoms? - Other

cs_symptoms_oth

Please provide details on other symptoms

cs_tb_symp_done

Was TB screening done?

cs_tb_symp

Do you have any of the following symptoms

cs_tb_symp_0

Do you have any of the following symptoms - Asymptomatic

cs_tb_symp_1

Do you have any of the following symptoms - Persistent Cough

cs_tb_symp_2

Do you have any of the following symptoms - Drastic weight loss

cs_tb_symp_3

Do you have any of the following symptoms - Drenching Night sweats

cs_tb_symp_4

Do you have any of the following symptoms - Loss of appetite

cs_tb_symp_5

Do you have any of the following symptoms - Haemoptysis

cs_tb_symp_6

Do you have any of the following symptoms - Fever

cs_tb_symp_7

Do you have any of the following symptoms - Chest pain

cs_calc_num_tbsymp

Calculated Variable: Number of TB Symptoms

cs_tb_refmt_doh

Has this participant been referred to the DoH for TB?

cs_hiv_test_hist_done

Was participant asked about HIV Testing History?

cs_recv_hivresult

Have you ever received a test result for HIV?

cs_pos_hivresult

Have you ever had a positive HIV test result?

cs_curr_arttreat

Are you currently receiving ART?

cs_past_mh_done

Was PMH / DH / Allergies screening done?

cs_past_mh

Please ask about Past Medical Histories and select all that apply

cs_past_mh_0

Please ask about Past Medical Histories and select all that apply - None

cs_past_mh_1

Please ask about Past Medical Histories and select all that apply - Diabetes

cs_past_mh_2

Please ask about Past Medical Histories and select all that apply - Hypertension

cs_past_mh_3

Please ask about Past Medical Histories and select all that apply - Asthma

cs_past_mh_4

Please ask about Past Medical Histories and select all that apply - Congenital A

cs_past_mh_5

Please ask about Past Medical Histories and select all that apply - HIV

cs_past_mh_6

Please ask about Past Medical Histories and select all that apply - TB

cs_past_mh_7

Please ask about Past Medical Histories and select all that apply - Meningitis

cs_past_mh_8

Please ask about Past Medical Histories and select all that apply - Pneumonia

cs_past_mh_96

Please ask about Past Medical Histories and select all that apply - Other

cs_past_mh_oth

Please provide details on other Past Medical Histories

cs_on_curr_on_meds

Are you currently on Chronic or other Medication

cs_on_tb_treat

Have you been on TB Treatment in the past 3 months?

cs_dh

Please specify details of drugs

cs_any_allergies

Is the participant allergic to anything?

cs_allergies_speci

Please provide details on Specific Allergies

cs_hiv_repoduc_hist_done

Was participant asked about Reproductive / Pregnancy History?

cs_often_period

How often do you have your period?

cs_period_oth

Other details on period frequency

cs_last_period

When was your last period?

mt_days_bleed

How many days do you normally bleed

cs_fatherclindren

Have you ever fathered any children?

cs_currpregnant

Are you currently pregnant?

cs_everpregnant

Have you ever been pregnant?

cs_agepregnant

How old were you the first time you got pregnant? [age in years]

cs_times_pregnant

How many times have you been pregnant? (including pregnancies that did not go to

cs_times_birth

How many times have you given birth? (include both live births and stillbirths.

cs_areusemeth_avoidpreg

Are you currently using any contraceptive methods to prevent pregnancy?

cs_currmeth_avoidpreg

Which methods are you currently using?

cs_currmeth_avoidpreg_1

Which methods are you currently using? - Male condom

cs_currmeth_avoidpreg_10

Which methods are you currently using? - Douching after sex

cs_currmeth_avoidpreg_11

Which methods are you currently using? - Female sterilization ('tubal ligation')

cs_currmeth_avoidpreg_12

Which methods are you currently using? - Male sterilization ('vasectomy')

cs_currmeth_avoidpreg_2

Which methods are you currently using? - Female condom

cs_currmeth_avoidpreg_3

Which methods are you currently using? - Oral contraceptive pills

cs_currmeth_avoidpreg_4

Which methods are you currently using? - Injectable contraceptives

cs_currmeth_avoidpreg_5

Which methods are you currently using? - Implants

cs_currmeth_avoidpreg_6

Which methods are you currently using? - IUD/loop

cs_currmeth_avoidpreg_7

Which methods are you currently using? - Rhythm method

cs_currmeth_avoidpreg_8

Which methods are you currently using? - Traditional methods

cs_currmeth_avoidpreg_9

Which methods are you currently using? - Withdrawal method or thigh sex

cs_currmeth_avoidpreg_96

Which methods are you currently using? - Other (specify)

cs_currmeth_avoidpreg_98

Which methods are you currently using? - Prefer not to answer

cs_currmeth_otherspec

Other method, please specify:

cs_circumcised

Have you ever been circumcised

cs_vac_hpv_done

Was the participant asked about HPV vaccines?

cs_vac_hpv

Have you been vaccinated against HPV?

cs_had_pap_smear

Have you had your Pap smear

cs_pap_result

What was the result?

cs_pap_date

When was the last Pap smear

cs_sex_hist_done

Was the participant asked about Sexual History?

cs_everhadsex

Have you ever had sex?

cs_share12mth_numsexpartn

Are you willing to share the number of different people have you had sex with in

cs_12mth_numsexpartn

How many people have you had sex with in the past 12 months (including your husb

cs_condomless_3months

Have you had any sex without a condom in the last 3 months? (condom less sex)?

cs_knwpartnstatus_curr

Do you know the HIV status of your current sexual partner?

cs_partnstatus_curr

What is the HIV status of your current sexual partner?

cs_gift_forsex

Did you ever give or were you ever given a gift in order to have sex? It could b

cs_sasa_expr

IPV (SASA!)Has your partner/most recent partner done at least one of the followi

srs_useviol_12mths

Have you used physical or sexual violence on your partner in the last 12 months?

cs_drug_alc_smok_done

Was the Participant asked about Tobacco, Alcohol and Drug Use?

cs_smoke_hist

In your whole life up to now, have you ever smoked a cigarette?

cs_smoked_perday

How many cigarettes do you smoke in a day?

cs_everdrink

In your whole life up to now, have you ever drunk one "drink" of alcohol (e.g. a

cs_daysdrunk_mths

How many days have you drunk at least one drink in the past month? [number of da

cs_more5drinks_day

How many days have you drunk 5 or more drinks (in succession) on one or more day

cs_usedoth_drugs

Have you used any of these drugs in the past 3 months (Tick all that apply)

cs_usedoth_drugs_0

Have you used any of these drugs in the past 3 months (Tick all that apply) - No

cs_usedoth_drugs_1

Have you used any of these drugs in the past 3 months (Tick all that apply) - Ca

cs_usedoth_drugs_2

Have you used any of these drugs in the past 3 months (Tick all that apply) - Sn

cs_usedoth_drugs_3

Have you used any of these drugs in the past 3 months (Tick all that apply) - In

cs_usedoth_drugs_4

Have you used any of these drugs in the past 3 months (Tick all that apply) - Me

cs_usedoth_drugs_5

Have you used any of these drugs in the past 3 months (Tick all that apply) - Co

cs_usedoth_drugs_6

Have you used any of these drugs in the past 3 months (Tick all that apply) - He

cs_usedoth_drugs_7

Have you used any of these drugs in the past 3 months (Tick all that apply) - Cl

cs_usedoth_drugs_93

Have you used any of these drugs in the past 3 months (Tick all that apply) - Pr

cs_usedoth_drugs_96

Have you used any of these drugs in the past 3 months (Tick all that apply) - Ot

Total: 433

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