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    Home / Central Data Catalog / TASP / ANRS12249TASP.3IE.MAIN.PAPER
tasp

Treatment as Prevention ANRS 12249 - datasets for Lancet HIV pain paper

South Africa, 2012 - 2016
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Reference ID
ANRS12249TasP.3ie.main.paper
Producer(s)
Dabis, François, Newell, Marie-Louise, Pillay, Deenan
Collections
TasP ANRS 12249
Metadata
Documentation in PDF DDI/XML JSON
Created on
Jan 30, 2018
Last modified
Feb 02, 2018
Page views
357797
Downloads
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  • Study Description
  • Data Dictionary
  • Downloads
  • Get Microdata
  • Related Publications
  • Data files
  • HIV Drug
    Treatments
  • Households
  • CHEs
  • Lab Test
    Results
  • ARTemis Lab
    Results
  • ARTemis
    Patients
  • CHE Adverse
    Events
  • SCBs SCCs
  • CHE Action
    Plans
  • Clusters
  • Visits
  • HHIs
  • CFUs
  • CFU Pill Tests
  • Local Areas
  • Census Rounds
  • SCIs
  • Individual
    Consents
  • SAEs Initial
    Notifications
  • SAEs Initial
    Notifications -
    Events details
  • SAEs Initial
    Notifications -
    Medications
  • SAEs
    Complementary
    Notifications
  • SAEs
    Complementary
    Notifications -
    Medications
  • CBCs
  • Specimens
  • IQs
  • Minority
    Variants
  • BMQ Surveys
  • NGS Genomics
  • Refusals
  • NgsAssembQuality
  • Sample Genomics
  • Locations
  • LinkToCareTracker
  • Exits
  • ACCDB
    Encounters
  • ACCDB Encounter
    Therapies
  • Individuals
  • Trial Statuses
  • DBS results
    expanded
Variable Groups
  • Identifiers
    • ClusterId
    • LocationId
    • HouseholdId
    • IndividualId
    • VisitId
    • CVIntId
    • StaffMemberId
    • AdvEventEpisodeId
    • DocumentId
    • SAEIntId
    • CensusRoundId
    • LocalAreaCode
    • SpecimenId

Data file: ARTemis Patients

This file contains data from ARTemis database for each registered TasP individual linked to ARTemis. One row per individual.

The data collated here is obtained from patients' records completed during routine HIV clinical care within the Hlabisa Treatment and Care Programme. The HIV treatment and Care programme was implemented as a joint initiative by the Department of Health (DoH) and the Africa Centre for Health and Population Studies (http://www.africacentre.ac.za) in response to the Comprehensive HIV and AIDS Care Management and Treatment Plan in 2004. HIV treatment and care is offered in 17 nurse-led primary health-care (PHC) clinics and 1 district hospital. The data comprises HIV positive patients pre- and post- ART initiation. However for patients pre-ART only the personal identifiers (name, sex and South African ID number) and the CD4 counts measured for assessment of ART eligibility are recorded. All patients within ARTemis are HIV positive and all patients are aware of their HIV status. This database was initially set up for monitoring and evaluating (M&E) patients and programme performance and outcomes. Over time in addition to M&E, these data are used to answer research questions to better understand issues related to HIV and ART in HIV positive patients.

Routine data collection schedule is summarized below:

Basic details

Age, sex, address, ID number, contact details, treatment clinic (collected at ART initiation only or when need arises during follow-up)

Socio-demographic details

Grants received, employment, school attendance, number of dependents (collected at ART initiation only)

Tuberculosis (TB) record

Tuberculosis (TB) record

Previous history of TB, TB treatment at initiation, new episodes of TB (collected only in those receiving ART)

ART record

WHO clinical stage, Previous ART and/or PMTCT, ART regimen at initiation, changes in ART regimen during treatment

Laboratory data

For patients on ART

Baseline and 6-monthly CD4 and HIV viral load, baseline haematology and biochemistry

For patients pre-ART

All pre-ART CD4 cell counts routinely done in accordance with the South African ART guidelines are recorded

Cases: 5362
Variables: 121

Variables

IndividualId
Individual identifier (TasP)
AgeAtInitiation
Age at ART initiation
DateOfDeath
Date of death
EarliestRegistrationClinic
Registration clinic
DateRegdAtEarliestClinic
Registration date
InitiationRegistrationClinic
ART Initiation clinic
DateRegdAtInitiationClinic
Registration date at iniation clinic
CurrentRegistrationClinic
Current clinic
DateRegdAtCurrentClinic
Registration date at current clinic
IsTransferIn
Patient transferred from elsewhere to current clinic
CurrentFollowUpStatus
Current follow-up status
DateLastFollowedUp
Date of last follow-up
LastClinicVisitDate
Date of last clinic visit
ARTDateEligible
Date of ART eligibility
ARTDateTrainingStarted
Date when ART training sessions started
DateOfInitiation
Date of ART initiation
DoctorsPrescriptionDate
Date of first ART presciption
ARTDaysEligibleToInitiation
Days between eligibility and initiation
AnyPreviousART
Received ART prior to documented date of ART initiation
OnTBtreatmentAtInitiation
On TB treatment at time of ART initiation
PregnantAtInitiation
Pregnant at time of ART initiation
PreviousART_Treatment_Year
Previously on ART - Years on treatment
PreviousART_Treatment_Months
Previously on ART - Months on treatment
PreviousART_Treatment_nDrugs
Previously on ART - Number of drugs
PreviousART_PMTCT_Year
Previously on PMTCT drugs - Years on treatment
PreviousART_PMTCT_Months
Previously on PMTCT drugs - Months on treatment
PreviousART_PMTCT_nDrugs
Previously on PMTCT drugs - Number of drugs
DateOfEarliestCD4Count
Date of the first C countD
EarliestCD4Count
First CD4 count (/µL)
EarliestCD4Pct
First CD4 percentage
LastCD4DateBeforeInitiation
Date of last CD4 count before ART initiation
LastCD4CountBeforeInitiation
Last CD4 count (/µL) before ART initiation
LastCD4PctBeforeInitiation
Last CD4 percentage before ART initiation
DateOfFirstCD4CountAfterInit
Date of first CD4 count after ART initiation
FirstCD4CountAfterInit
First CD4 count (/µL) after ART initiation
FirstCD4PctAfterInit
First CD4 percentage after ART initiation
CD4DateNear6m
Date of CD4 count near 6 months after ART initiation
CD4CountNear6m
CD4 count (/µL) near 6 months after ART initiation
CD4PctNear6m
CD4 percentage near 6 months after ART initiation
CD4DateNear12m
Date of CD4 count near 12 months after ART initiation
CD4CountNear12m
CD4 count (/µL) near 12 months after ART initiation
CD4PctNear12m
CD4 percentage near 12 months after ART inition
CD4DateNear24m
Date of CD4 count near 24 months after ART initiation
CD4CountNear24m
CD4 count (/µL) near 24 months after ART initiation
CD4PctNear24m
CD4 percentage near 24 months after ART inition
CD4DateNear36m
Date of CD4 count near 36 months after ART initiation
CD4CountNear36m
CD4 count (/µL) near 36 months after ART initiation
CD4PctNear36m
CD4 percentage near 36 months after ART inition
DateOfLatestCD4Count
Date of last CD4 count
LatestCD4Count
Latest CD4 count (/µL)
LatestCD4Pct
Latest CD4 percentage
NumberOfCD4tests
Number of CD4 counts
HadTBpriorToInitiation
Had TB prior to ART initiation
DateOfEarliestVLTest
Date of the first Viral Load
EarliestViralLoad
First Viral Load
DateOfLastViralLoadBeforeInit
Date of last Viral Load before ART initiation
LastViralLoadBeforeInit
Last Viral Load before ART initiation
DateOfFirstViralLoadAfterInit
Date of first Viral Load after ART initiation
FirstViralLoadAfterInit
First Viral Load after ART initiation
DateOfViralLoadNear6m
Date of Viral Load near 6 months after ART initiation
ViralLoadNear6m
Viral Load near 6 months after ART initiation
DateOfViralLoadNear12m
Date of Viral Load near 12 months after ART initiation
ViralLoadNear12m
Viral Load near 12 months after ART initiation
DateOfViralLoadNear24m
Date of Viral Load near 24 months after ART initiation
ViralLoadNear24m
Viral Load near 24 months after ART initiation
DateOfViralLoadNear36m
Date of Viral Load near 36 months after ART initiation
ViralLoadNear36m
Viral Load near 36 months after ART initiation
DateOfLatestVLTest
Date of latest Viral Load
LatestViralLoad
Latest Viral Load
LatestViralLoadBelowLDL
Latest Viral Load below lowest detectable limit
LatestTestDate
Date of latest lab test
CurrentlyOnART
Currently on ART
LastHGBBeforeInit
Last Haemoglobin HGB (g/dL) before ART initiation
DateOfLastHGBBeforeInit
Date of last Haemoglobin HGB before ART initiation
FirstHGBAfterInit
First Haemoglobin HGB (g/dL) after ART initiation
DateOfFirstHGBAfterInit
Date of first Haemoglobin HGB after ART initiation
LatestHGB
Latest Haemoglobin HGB (g/dL)
DateOfLatestHGB
Date of latest Haemoglobin HGB
LastCreatinineBeforeInit
Last Creatinine (µmol/L) before ART initiation
DateOfLastCreatinineBeforeInit
Date of last Creatinine before ART initiation
FirstCreatinineAfterInit
First Creatinine (µmol/L) after ART initiation
DateOfFirstCreatinineAfterInit
Date of first Creatinine after ART initiation
LatestCreatinine
Latest Creatinine (µmol/L)
DateOfLatestCreatinine
Date of latest Creatinine
FirstHIVDrugRegimen
First ART - Regimen
FirstHIVDrug1
First ART - Drug 1
FirstHIVDrug2
First ART - Drug 2
FirstHIVDrug3
First ART - Drug 3
FirstHIVDrug4
First ART - Drug 4
LatestHIVDrugRegimen
Latest ART - Regimen
LatestHIVDrug1
Latest ART - Drug 1
LatestHIVDrug2
Latest ART - Drug 2
LatestHIVDrug3
Latest ART - Drug 3
LatestHIVDrug4
Latest ART - Drug 3
LatestHIVRegimenDateStarted
Date when latest ART regimen was initiated
LatestHIVRegimenDateStopped
Date when latest ART regimen was stopped
LastWeightKgBeforeInit
Last weight measurement (kg) before ART initiation
DateOfLastWeightKgBeforeInit
Date of last weight measurement before ART initiation
FirstWeightKgAfterInit
First weight measurement (kg) after ART initiation
DateOfFirstWeightKgAfterInit
Date of first weight measurement after ART initiation
LastHeightCmBeforeInit
Last height measurement (cm) before ART initiation
DateOfLastHeightCmBeforeInit
Date of last height measurement before ART initiation
FirstHeightCmAfterInit
First height measurement (cm) after ART initiation
DateOfFirstHeightCmAfterInit
Date of first height measurement after ART initiation
LastHIVStagingBeforeInit
Last HIV stage before ART initiation
DateOfLastHIVStagingBeforeInit
Date of last HIV stage before ART initiation
FirstHIVStagingAfterInit
First HIV stage after ART initiation
DateOfFirstHIVStagingAfterInit
Date of first HIV stage after ART initiation
DateLatestPCcollected
Date of latest personal circumstances data collected
AreaOfResidenceCode
Residence area code
DateLastPickedUpMedication
Date last time patient picked up medication
LastPLTBeforeInit
Last Platelet Count PLT (×10^9/L) before ART initiation
DateOfLastPLTBeforeInit
Date of last Platelet Count PLT before ART initiation
LastALTBeforeInit
Last Alanine Transaminase ALT (U/L) before ART initiation
DateOfLastALTBeforeInit
Date of last Alanine Transaminase ALT before ART initiation
LastALBBeforeInit
Last Albumin ALB (g/L) before ART initiation
DateOfLastALBBeforeInit
Date of Albumin ALB before ART initiation
LastTBilBeforeInit
Last Total Bilirubin (µmol/L) before ART initiation
DateOfLastTBilBeforeInit
Date of last Total Bilirubin before ART initiation
LastHBSagBeforeInit
Last Surface Ag Rapid Test Result HBsAG before ART initiation
DateOfLastHBSagBeforeInit
Date of last Surface Ag Rapid Test Result HBsAG bafore ART initiation
Total: 121
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