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    Home / Central Data Catalog / TASP / ANRS12249TASP.3IE.MAIN.PAPER
tasp

Treatment as Prevention ANRS 12249 - datasets for Lancet HIV pain paper

South Africa, 2012 - 2016
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Reference ID
ANRS12249TasP.3ie.main.paper
Producer(s)
Dabis, François, Newell, Marie-Louise, Pillay, Deenan
Collections
TasP ANRS 12249
Metadata
Documentation in PDF DDI/XML JSON
Created on
Jan 30, 2018
Last modified
Feb 02, 2018
Page views
357797
Downloads
4626
  • Study Description
  • Data Dictionary
  • Downloads
  • Get Microdata
  • Related Publications
  • Data files
  • HIV Drug
    Treatments
  • Households
  • CHEs
  • Lab Test
    Results
  • ARTemis Lab
    Results
  • ARTemis
    Patients
  • CHE Adverse
    Events
  • SCBs SCCs
  • CHE Action
    Plans
  • Clusters
  • Visits
  • HHIs
  • CFUs
  • CFU Pill Tests
  • Local Areas
  • Census Rounds
  • SCIs
  • Individual
    Consents
  • SAEs Initial
    Notifications
  • SAEs Initial
    Notifications -
    Events details
  • SAEs Initial
    Notifications -
    Medications
  • SAEs
    Complementary
    Notifications
  • SAEs
    Complementary
    Notifications -
    Medications
  • CBCs
  • Specimens
  • IQs
  • Minority
    Variants
  • BMQ Surveys
  • NGS Genomics
  • Refusals
  • NgsAssembQuality
  • Sample Genomics
  • Locations
  • LinkToCareTracker
  • Exits
  • ACCDB
    Encounters
  • ACCDB Encounter
    Therapies
  • Individuals
  • Trial Statuses
  • DBS results
    expanded
Variable Groups
  • Identifiers
    • ClusterId
    • LocationId
    • HouseholdId
    • IndividualId
    • VisitId
    • CVIntId
    • StaffMemberId
    • AdvEventEpisodeId
    • DocumentId
    • SAEIntId
    • CensusRoundId
    • LocalAreaCode
    • SpecimenId

Data file: NgsAssembQuality

Dataset contains 1 row per individual Next Generation Sequencing (NGS) sequence analysed. Dataset provided details of the Sequence assembly quality for each sample analysed.

Cases: 1426
Variables: 22

Variables

SpecimenId
Unique anonymised specimen identifier
NucleotideSequencesWithMates
Number of nucleotide sequences with mates
NucleotideSequencesWithQuality
Number of nucleotide sequences with mates
Nucleotides
Number of nucleotides
Sequences
Number of sequences
IdenticalSites
Percentage of identical sites
OfRefSeq
Percentage of Ref Seq
PairwiseIdentity
Percentage of Pairwise Identity
CreatedDate
Date of creation
Description
Description
Freeendgaps
Free end gaps
MaxSequenceLength
Maximum sequence length
MeanCoverage
Mean Coverage
MinSequenceLength
Minimum sequence lenght
Modified
Modified
Name
Name
RefSeqIndex
Ref sequence index
RefSeqLength
Ref sequence length
RefSeqName
Ref sequence name
SequenceLength
Sequence length
Size
Size
Topology
Topology
Total: 22
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